Publications

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273total
241journal
21proceedings
33with PDFs
2005–2025years

2025

Journal Articles

N.S. Yee, A. Berg, A.B. Benson, A. Turk, P.M. Boland, C. Peterson (2025).
A phase II study of liposomal irinotecan in combination with oxaliplatin, leucovorin, and 5-fluorouracil (NALIRIFOX) in locally advanced pancreatic carcinoma: BTCRC-GI15-067. JCO Oncology Advances.
J.S. Brenman, A. Berg, A.W. Heinemann, Y. Chen, E.R. Felix, G.J. Farkas (2025).
Associations Between Obesity and Cardiometabolic, Physical, and Psychosocial Health in Chronic Traumatic Spinal Cord Injury. Archives of Physical Medicine and Rehabilitation. DOI
G.J. Farkas, L.J. Caldera, D.D. Hodgkiss, J.R. Mitchell, T.F. Pelaez, M.A. Cusnier, A.J. Cole, S.G. Daniel, et al. (2025).
Cardiometabolic Risk in Chronic Spinal Cord Injury: A Systematic Review with Meta-Analysis and Temporal and Geographical Trends. Journal of clinical medicine, 14(2872), 1-31.
A.T. Lato, A. Berg, J.A. Parascando, S.F. Phillips, C.A. Onks, J.R. Loeffert (2025).
Enhancing Knowledge and Confidence in Wilderness Medicine Through Virtual Education: Lessons From a National Boot Camp. Cureus, 17(2).
A. Berg (2025).
Entropy-based Sound-Character Mapping for Chinese Character Learning. International Journal of Chinese Language Teaching, 6(2), 63-89. PDF DOI Supplement
G.J. Farkas, P.M. Cunningham, A. Berg, G. Jimsheleishvili, A.J. Mendez, D.R. Gater, M.S. Nash, B.J. Rolls (2025).
Gastrointestinal dysmotility and impaired gut peptide-satiety coupling in men with spinal cord injury. Physiology & Behavior, 305, 115207. DOI
Z. Donato, A. Levy, A. Sneij, S. LaVela, A. Berg, L. Shapiro, G. Farkas (2025).
Grocery Shopping Behavior and Eating Behavior Differ Between Persons with and without a Spinal Cord Injury. Topics in Spinal Cord Injury Rehabilitation, 31(1), 66-76.

2024

Journal Articles

N. Hawila, A. Berg (2024).
Bayesian Joint Modeling of Interrater and Intrarater Reliability with Multilevel Data. Asian Journal of Statistics and Applications, 1(1), 85-99. PDF DOI
A. Berg (2024).
Causal inference from high-dimensional static data in soil microbiota networks: Comment on “Topological change of soil microbiota networks for forest resilience under global warming” by Gong et al. Physics of life reviews, 51, 281-282. PDF DOI
E. Allen, E. Goldstein, R. Lennon, A. Berg, C. Regner, R. Eiden, D. Symons Downs, J. Neiderhiser, et al. (2024).
COVID-19 pandemic-related perceived loneliness as a potential risk factor for worse outcomes among people who are pregnant or postpartum. Wisconsin Medical Journal, 123(6), 515-520.
D. McGuire, H. Markus, L. Yang, J. Xu, A. Montgomery, A. Berg, Q. Li, L. Carrel, et al. (2024).
Dissecting heritability, environmental risk, and air pollution causal effects using> 50 million individuals in MarketScan. Nature communications, 15(1), 5357. DOI
A. Berg (2024).
Quantitative Methods for Precision Medicine: Pharmacogenomics in Action: Rongling Wu, Boca Raton, FL: Chapman & Hall/CRC Press. Journal of the American Statistical Association, 119(546), 1690-1691. PDF DOI
G.J. Farkas, A. Berg, A. Sneij, D.R. Dolbow, A.S. Gorgey, D.R. Gater (2024).
The comparison of total energy and protein intake relative to estimated requirements in chronic spinal cord injury. British Journal of Nutrition, 131(3), 489–499. DOI
C. Onks, L. Weaver, J. Latorre, M. Silvis, A. Berg, S. Phillips, J. Loeffert, C. French, et al. (2024).
The most effective corticosteroid dose in the treatment of glenohumeral osteoarthritis: Feasibility pilot and protocol for double blinded randomized controlled trial. Osteoarthritis and Cartilage Open, 6(3), 100484. DOI
V. Vangala, Y. Chen, S.S. Dinavahi, K. Gowda, N.A. Lone, M. Herlyn, J. Drabick, K. Helm, et al. (2024).
Tumor Heterogeneity Shapes Survival Dynamics in Drug-Treated Cells, Revealing Size-Drifting Subpopulations. ACS Pharmacology & Translational Science, 7(11), 3573-3584.
M.E. Healy, L.H. Messer, M.G. Stasinopoulos, S.E. Brewer, A. Berg, T.K. Oser (2024).
Understanding patient and health care provider perceptions of barriers and facilitators to diabetes care in immigrant and refugee populations. Discover Public Health, 21(88), 1-12. DOI

2023

Journal Articles

A. Darby, J.A. Parascando, M. Lipinski, C. Lipinski, M. Mendez-Miller, A. Berg, D. Rabago, T.K. Oser (2023).
Awareness and interest in osteopathic manipulative treatment in allopathic medical students. Journal of Osteopathic Medicine, 123(8), 379-384. DOI
N. Hawila, A. Berg (2023).
Exact-corrected confidence interval for risk difference in noninferiority binomial trials. Biometrics, 79(2), 1133-1144. PDF DOI
K. Karpa, J. Ward, M. Stegman, A. Berg, S.L. Leong (2023).
IPEx: A gamification tool for learner application of pharmacologic principles of opioid use, misuse, and addiction. Pharmacology Research & Perspectives, 11(5), e01141. DOI
M. Larsen, F. He, Y.I. Kawasawa, A. Berg, A.N. Vgontzas, D. Liao, E.O. Bixler, J. Fernandez-Mendoza (2023).
Objective and subjective measures of sleep initiation are differentially associated with DNA methylation in adolescents. Clinical Epigenetics, 15, 136. DOI
G.J. Farkas, P.M. Cunningham, A.M. Sneij, J.E. Hayes, M.S. Nash, A. Berg, D.R. Gater, B.J. Rolls (2023).
Reasons for meal termination, eating frequency, and typical meal context differ between persons with and without a spinal cord injury. Appetite, 192(107110), 1-9. DOI
M.M. Mankarious, A.J. Hughes, A. Berg, J.S. Scow, A.N. Jeganathan, A.S. Kulaylat, M.J. Deutsch (2023).
Survival outcomes of anal adenocarcinoma versus rectal adenocarcinoma: A retrospective cohort study. Indian Journal of Gastroenterology, 42, 694-700. DOI
G.J. Farkas, A. Berg, A. Sneij, D.R. Dolbow, A.S. Gorgey, D.R. Gater (2023).
The comparison of total energy and protein intake relative to estimated requirements in chronic spinal cord injury. British Journal of Nutrition, 1–11. DOI
H. Wang, K.N. Berger, E.L. Miller, W. Fu, L. Broglie, F.D. Goldman, H. Konig, S.J. Lim, et al. (2023).
The impacts of total body irradiation on umbilical cord blood hematopoietic stem cell transplantation. Therapeutic Advances in Hematology, 14, 1-13. DOI
S.A. Walser, H. Costigan, H.L. Stuckey, A. Berg, M.B. Stephens (2023).
The Opaque Language of Sexuality: Medical Students’ and Providers’ Beliefs About Virginity. Archives of Sexual Behavior, 52, 2619–2638. DOI
F. Satriale, J.C. Garman, S. Roy, J. Parascando, A. Berg, T. Oser (2023).
Understanding Nutritional Knowledge and Experiences in Families with a Child Newly Diagnosed with Type 1 Diabetes. Diabetes Spectrum, 36(1), 52-58.

2022

Journal Articles

G.J. Farkas, A. Swartz, A. Gorgey, A. Berg, D. Gater (2022).
Acute exercise improves glucose effectiveness but not insulin sensitivity in paraplegia. Disability and Rehabilitation, 44(17), 4656-4662. DOI
T.D. Riley, J.A. Radico, J. Parascando, A. Berg, T.K. Oser (2022).
Challenges in Effective Faculty and Provider Recognition to Enhance Engagement. Family Medicine, 54(6), 461-465. DOI
C. Tom, N. Jeganathan, M. Deutsch, W. Koltun, A. Berg, J. Scow (2022).
Characteristics and Outcomes of Right- Versus Left-Sided Early Onset Colorectal Cancer. Diseases of the Colon and Rectum. DOI
L. Lafferty, J. Wawrzyniak, M. Chambers, T. Pagliarulo, A. Berg, N. Hawila, M. Silvis (2022).
Clinical indoor running gait analysis may not approximate outdoor running gait based on novel drone technology. Sports health, 14(5), 710–716. DOI
D. Schlegel, C. Heron, A. Berg, J. Parascando, M. Silvis (2022).
Diagnoses per Encounter by Telephone, Televideo, and In-Office Visits. Journal of the American Board of Family Medicine, 35(3), 491-496.
E.K. Batra, V.J. Palusci, A. Berg (2022).
Factors associated with child maltreatment fatality among children with an open Child Protective Services case at death. Child Abuse Review, 31(e2734), 1-14. DOI
D.R. Dolbow, G.J. Farkas, A. Berg, M.A. Welsch, A.S. Gorgey, D.R. Gater (2022).
Fat to lean mass ratio in spinal cord injury: Possible interplay of components of body composition that may instigate systemic inflammation and metabolic syndrome. The Journal of Spinal Cord Medicine, 45(6), 833-839. DOI
S.S. Dinavahi, Y. Chen, R. Gowda, P.K. Dhanyamraju, K. Punnath, D. Desai, A. Berg, S.R. Kimball, et al. (2022).
Targeting Protein Translation in Melanoma by Inhibiting EEF-2 Kinase Regulates Cholesterol Metabolism though SREBP2 to Inhibit Tumor Development. International Journal of Molecular Sciences, 23, 3481(1-19). DOI
S.S. Dinavahi, Y. Chen, K. Punnath, A. Berg, M. Herlyn, M. Foroutan, N.D. Huntington, G.P. Robertson (2022).
Targeting WEE1/AKT restores p53-dependent NK cell activation to induce immune checkpoint blockade responses in ‘cold’ melanoma. Cancer Immunology Research, 10(6), 757-769. DOI

2021

Journal Articles

J. Liao, A. Berg, T.L. McMurry (2021).
A Robustified Posterior for Bayesian Inference on a Large Number of Parallel Effects. The American Statistician, 75(2), 145-151. PDF DOI
Y. Chen, S.S. Dinavahi, Q. Feng, R. Gowda, S. Ramisetti, X. Xia, K.B. LaPenna, V.R. Chirasani, et al. (2021).
Activating Sphingosine-1-phospahte signaling in endothelial cells increases myosin light chain phosphorylation to decrease endothelial permeability thereby inhibiting cancer metastasis. Cancer Letters, 506, 107–119. DOI
N. Hawila, A. Berg (2021).
Assessing the impact of COVID-19 on registered interventional clinical trials. Clinical and Translational Science, 14(3), 1147-1154. PDF DOI
A. Berg (2021).
Bayesian explorations with dice. Teaching Statistics, 43, 114–123. PDF
A. Berg (2021).
Bayesian Modeling Competitions for the Classroom. Colombian Journal of Statistics, 44(2), 243-252. PDF DOI
D.R. Gater Jr, G.J. Farkas, D.R. Dolbow, A. Berg, A.S. Gorgey (2021).
Body Composition and Metabolic Assessment After Motor Complete Spinal Cord Injury: Development of a Clinically Relevant Equation to Estimate Body Fat. Topics in Spinal Cord Injury Rehabilitation, 27(1), 11–22. DOI
B.P. Kline, T. Weaver, D.L. Brinton Jr, L. Harris, G.S. Yochum, A. Berg, W.A. Koltun (2021).
Clinical and Genetic Factors Impact Time to Surgical Recurrence After Ileocolectomy for Crohn’s Disease. Annals of Surgery, 274(2), 346–351. DOI
B.P. Kline, G.S. Yochum, D.L. Brinton, K.M. Schieffer, T. Weaver, L. Harris, S. Deiling, A. Berg, et al. (2021).
COLQ and ARHGAP15 are associated with diverticular disease and are expressed in the colon. Journal of Surgical Research, 267, 397–403. DOI
G.J. Farkas, P.S. Gordon, N. Trewick, A.S. Gorgey, D.R. Dolbow, E. Tiozzo, A. Berg, D.R.G. Jr (2021).
Comparison of Various Indices in Identifying Insulin Resistance and Diabetes in Chronic Spinal Cord Injury. Journal of Clinical Medicine, 10(23), 5591: 1-16. DOI
J. Liao, V. Midya, A. Berg (2021).
Connecting and contrasting the Bayes factor and a modified ROPE procedure for testing interval null hypotheses. The American Statistician, 75(3), 256-264. PDF DOI
A. O’Donovan, S.M. Oser, J. Parascando, A. Berg, D.E. Nease Jr, T.K. Oser (2021).
Determining the Perception and Willingness of Primary Care Providers to Prescribe Advanced Diabetes Technologies. Journal of Patient-Centered Research and Reviews, 8(3), 272–276. DOI
U. Golla, M.A. Ehudin, C. Annageldiyev, Z. Zeng, D.B. Tukaramrao, A. Tarren, A.A. Date, I. Elcheva, et al. (2021).
DJ4 Targets the Rho-Associated Protein Kinase Pathway and Attenuates Disease Progression in Preclinical Murine Models of Acute Myeloid Leukemia. Cancers, 13(19), 4889. DOI
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater Jr (2021).
Energy Expenditure, Cardiorespiratory Fitness, and Body Composition Following Arm Cycling or Functional Electrical Stimulation Exercises in Spinal Cord Injury: A 16-Week Randomized Controlled Trial. Topics in Spinal Cord Injury Rehabilitation, 27(1), 121–134. DOI
J. Radico, T.K. Oser, T.B. Fausnight, A. Berg, A. Ouyang, S.L. Leong (2021).
Factors that Influence Work Family Conflict for Women Faculty. MedEdPublish, 10(63), 1-13. DOI
B. Gerace, J. Parascando, A. Berg, T. Oser, J. Radico (2021).
Food Security among Physician Residents. TBD.
S. Veldheer, C. Scartozzi, C. Bordner, C. Opara, B. Williams, L. Weaver, D. Rodriguez, A. Berg, et al. (2021).
Impact of a prescription produce program on diabetes and cardiovascular risk outcomes. Journal of Nutrition Education and Behavior, 53(12), 1008-1017. DOI
T.D. Riley, E. Messner, J.A. Parascando, C. LaGamma, A. Berg, J.R. Tucker, C.W. Bone (2021).
Impact of the COVID-19 shutdown on work-home conflict and burnout in a large department of family medicine: Disproportionate toll on women. TBD.
G. Raca, H. Abdel-Azim, F. Yue, J. Broach, J.L. Payne, M.E. Reeves, C. Gowda, J. Schramm, et al. (2021).
Increased Incidence of IKZF1 deletions and IGH-CRLF2 translocations in B-ALL of Hispanic/Latino children–-a novel health disparity. Leukemia, 35, 2399-2402. DOI
A. Berg, N. Hawila (2021).
Introducing Bayesian inference with the taxicab problem. Proceedings of the 10th Australian Conference on Teaching Statistics, 55-60. PDF
D. McGuire, Y. Jiang, M. Liu, J.D. Weissenkampen, S. Eckert, L. Yang, F. Chen, A. Berg, et al. (2021).
Model-based assessment of replicability for genome-wide association meta-analysis. Nature Communications, 12(1964), 1–14. DOI
R. Liu, C. Onks, J. Petscavage-Thomas, E. Walker, A. Berg, M. Silvis, A. Dhawan (2021).
Prevalence of shoulder labral abnormalities on MRI in a non-athletic asymptomatic young adult population. Skeletal Radiology, 50(5), 921-925. DOI
M. Polly, A. Berg, H. Dong, R. Lennon (2021).
Retrospective comparison of Brazilian Ribeirinho health between black-water (Rio Negro), white-water (Madeira River), and mixed-type (Purus River) communities. TBD.
M. Partin, A. Sanchez, J. Poulson, A. Berg, J. Parascando, S.I. Ramirez (2021).
Social inequities between prenatal patients in family medicine and obstetrics and gynecology with similar outcomes. The Journal of the American Board of Family Medicine, 34(1), 181–188. DOI
A. Berg, N. Hawila (2021).
Some Teaching Resources Using R with Illustrative Examples Exploring COVID-19 Data. Teaching Statistics, 43, S98-S109.
A. Berg (2021).
Statistical analysis of the International Mathematical Olympiad. The Mathematical Intelligencer, 43(1), 105-112. PDF DOI
J. Loeffert, C. Onks, S. Phillips, A. Berg, D. Rodgers (2021).
Wilderness Medicine Boot Camp for Primary Care Sports Medicine Fellows Goes Virtual: From Uncertain Times Comes a Novel Approach to Traditional In- person Teaching. Interdisciplinary Journal of Virtual Learning in Medical Sciences, 12(2), 2-7. DOI

2020

Journal Articles

R. Block, A. Berg, R.P. Lennon, E.L. Miller, M. Nunez-Smith (2020).
African American adherence to COVID-19 public health recommendations. HLRP: Health Literacy Research and Practice, 4(3), e166–e170. DOI
A. Berg (2020).
Assessing the impact of the NIH CTSA program on clinical trials registered with clinicaltrials.gov.. Clinical and Translational Science, 13, 818-825. PDF DOI
A. Berg (2020).
Bayesian statistics in the classroom: Introducing shrinkage with basketball statistics and the internet movie database. Teaching Statistics, 42(2), 47-53. PDF DOI
B.P. Kline, T. Weaver, D.L. Brinton Jr, S. Deiling, G.S. Yochum, A. Berg, W.A. Koltun (2020).
Clinical and Genetic Factors Associated With Complications After Crohn’s Ileocolectomy. Diseases of the Colon & Rectum, 63(3), 357-364. DOI
S.S. Dinavahi, R. Gowda, K. Gowda, C.G. Bazewicz, V.R. Chirasani, M.B. Battu, A. Berg, N.V. Dokholyan, et al. (2020).
Development of a Novel Multi-Isoform ALDH Inhibitor Effective as an Antimelanoma Agent. Molecular Cancer Therapeutics, 19(2), 447–459. DOI
O.F. Noel, A. Berg, N. Onyango, D.R. Mackay (2020).
Ethnic and Gender Diversity Comparison between Surgical Patients and Caring Surgeons. Plastic and Reconstructive Surgery Global Open, 8(10), 1–7. DOI
N. Hawila, A. Berg (2020).
Exploring and Analyzing COVID-19 Datasets Using R. Teaching Statistics.
T. Riley, W. Curry, M. Beck, A. Berg, M. Ruffin (2020).
Feasibility of Nonanonymous Burnout Surveys in a Large Academic Department. Family Medicine, 52(4), 278–281. DOI
G.J. Farkas, P.S. Gordon, A.M. Swartz, A. Berg, D.R. Gater (2020).
Influence of mid and low paraplegia on cardiorespiratory fitness and energy expenditure. Spinal Cord Series and Cases, 6(1), 1–10. DOI
A. Berg, D. Politis, K. Suaray, H. Zeng (2020).
Reduced bias nonparametric lifetime density and hazard estimation. TEST, 29, 704-727. PDF DOI
A. Berg (2020).
Statistical analysis of the Elo rating system in chess. Chance, 33(3), 31-38. PDF DOI

2019

Journal Articles

F. He, A. Berg, Y.I. Kawasawa, E.O. Bixler, J. Fernandez-Mendoz, E.A. Whitsel, D. Liao (2019).
Association between DNA methylation in obesity-related genes and body mass index percentile in adolescents. Scientific Reports, 9(2079), 1-8. PDF DOI
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2019).
Caloric Intake Relative to Total Daily Energy Expenditure Using a Spinal Cord Injury–Specific Correction Factor: An Analysis by Level of Injury. American Journal of Physical Medicine & Rehabilitation, 98(11), 947–952. DOI
G.J. Farkas, M.A. Pitot, A. Berg, D.R. Gater (2019).
Correction: Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis. Spinal cord, 57(3), 256–256. DOI
S.M. Oser, H.L. Stuckey, J.A. Parascando, E.L. McGinley, A. Berg, T.K. Oser (2019).
Glycated hemoglobin differences among blog-reading adults with type 1 diabetes compared with those who do not read blogs: cross-sectional study. JMIR diabetes, 4(2), e13634. DOI
G.J. Farkas, M.A. Pitot, A. Berg, D.R. Gater (2019).
Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis. Spinal Cord, 57(1), 3–17. DOI
D.R. Gater Jr, G.J. Farkas, A. Berg, C. Castillo (2019).
Prevalence of metabolic syndrome in veterans with spinal cord injury. The Journal of Spinal Cord Medicine, 42(1), 86–93. DOI
B. Kline, D. Brinton, W. Koltun, A. Berg (2019).
rs4662344 Allele Variant of the Rho GTPase Activating Protein 15 (ARHGAP15) Is Associated with Management of Diverticulitis. Journal of the American College of Surgeons, 229(4), S71–S72.
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2019).
Sex dimorphism in the distribution of adipose tissue and its influence on proinflammatory adipokines and cardiometabolic profiles in motor complete spinal cord injury. The Journal of Spinal Cord Medicine, 42(4), 430–436. DOI
J. Liao, A. Berg (2019).
Sharpening Jensen’s inequality. The American Statistician, 73(3), 278-281. PDF DOI
S.M. Matthews, M.A. Eshelman, A. Berg, W.A. Koltun, G.S. Yochum (2019).
The Crohn’s disease associated SNP rs6651252 impacts MYC gene expression in human colonic epithelial cells. PLoS ONE, 14(2). DOI
D. Brunke-Reese, P. Ssentongo, A.E. Ssentongo, B.E. Phillips, E.M. Pauli, A. Berg, S.L. Kelleher, D.I. Soybel (2019).
The Role of Genetic Variant rs13266634 in SLC30A8/ZnT8 in Postoperative Hyperglycemia After Major Abdominal Surgery. The Journal of Clinical Endocrinology & Metabolism, 104(9), 3877–3892. DOI

2018

Journal Articles

F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, A.N. Vgontzas, D. Liao (2018).
Abstract P129: Association Between Blood Pressure and DNA Methylation in Blood Pressure-related Genes in Adolescents. Circulation, 137(suppl_1), AP129–AP129.
S.S. Dinavahi, M.A. Noory, R. Gowda, J.J. Drabick, A. Berg, R.I. Neves, G.P. Robertson (2018).
Moving synergistically acting drug combinations to the clinic by comparing sequential versus simultaneous drug administrations. Molecular Pharmacology, 93(3), 190–196. DOI
J.M. Yingst, S. Veldheer, S. Hrabovsky, E. Hammett, J. Nicholson, A. Berg, J. Foulds (2018).
Pilot randomized trial of an automated smoking cessation intervention via mobile phone text messages as an adjunct to varenicline in primary care. Journal of Health Communication, 23(4), 370–378. DOI
J.P. Sheehan, I. Grills, V.L. Chiang, H. Dong, A. Berg, R.E. Warnick, D. Kondziolka, B. Kavanagh (2018).
Quality of life outcomes for brain metastasis patients treated with stereotactic radiosurgery: pre-procedural predictive factors from a prospective national registry. Journal of Neurosurgery, 131(6), 1848–1854.
P. Chen, K.K. Hallock, C.L. Mulvey, A. Berg, V.T. Cherian (2018).
The effect of elevated A1c on immediate postoperative complications: a prospective observational study. Clinical Diabetes, 36(2), 128–132. DOI
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2018).
The influence of level of spinal cord injury on adipose tissue and its relationship to inflammatory adipokines and cardiometabolic profiles. The Journal of Spinal Cord Medicine, 41(4), 407–415. DOI
S. Veldheer, S. Hrabovsky, J. Yingst, C. Sciamanna, A. Berg, J. Foulds (2018).
The use of self-directed relapse prevention booklets to assist in maintaining abstinence after a 6-week group smoking cessation treatment program: A randomized controlled trial. Health Education & Behavior, 45(2), 190–197. DOI
E. Hammett, S. Veldheer, S. Hrabovsky, J. Yingst, A. Berg, E. Poole, D. Stauffer, J. Foulds (2018).
TXT2STAYQUIT: pilot randomized trial of brief automated smoking cessation texting intervention for inpatient smokers discharged from the hospital. Journal of Hospital Medicine, 13(7), 488-489. DOI

Conference Proceedings

R. Weinheimer, J. Kent, A. Berg, F. Puleo (2018).
THE BRIDGE BETWEEN PRIMARY CARE AND THE COLORECTAL SPECIALIST IN THE TREATMENT OF FECAL INCONTINENCE AND CONSTIPATION.. DISEASES OF THE COLON & RECTUM, 61(5), E181–E182.

Other

S.M. Oser, T. Oser, E.L. Mcginley, A. Berg, H.L. Stuckey (2018).
Blog Use Is Associated with Lower Hemoglobin A1c in Adults with Type 1 Diabetes. American Diabetes Association.
D. Plano, S. Ramisetti, S. Kim, M. Pandey, C. Aliaga, D.N. Karelia, A. Berg, C. Sanmartin, et al. (2018).
Selective chemopreventive efficacy of 1, 4-phenylenebis (methylene) seleno-aspirin (p-XS-Asp) towards lung cancer. American Association for Cancer Research.

2017

Journal Articles

F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, E.A. Whitsel, D. Liao (2017).
Abstract P135: Abdominal Obesity is Associated With DNA Methylation in Cardiovascular Health Related Genes Among Adolescents. Circulation, 135(suppl_1), AP135–AP135.
F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, E.A. Whitsel, D. Liao (2017).
Abstract P136: Cardiometabolic Burden in Adolescents is Associated with DNA Methylation in Genes Related to Cardiovascular Disease Risk. Circulation, 135(suppl_1), AP136–AP136.
K. Crowell, K. Julian, M. Katzman, A. Berg, A. Tinsley, E. Williams, W. Koltun, E. Messaris (2017).
Compliance with Clostridium difficile treatment guidelines: effect on patient outcomes. Epidemiology & Infection, 145(11), 2185–2192. DOI
P.F. Wrafter, T.M. Connelly, J.S. Khan, B.C. Lucey, A. Berg, W. Koltun, W.P. Joyce (2017).
Diverticular disease is associated with benign intra-abdominal cystic disease. Expert Review of Gastroenterology & Hepatology, 11(5), 487–490. DOI
T.M. Connelly, C.S. Choi, A. Berg, L. Harris III, J. Coble, W.A. Koltun (2017).
Diverticulitis and Crohn’s disease have distinct but overlapping tumor necrosis superfamily 15 haplotypes. Journal of Surgical Research, 214, 262–269. DOI
G.J. Farkas, A.S. Gorgey, D. Dolbow, A.S. Berg, D.R. Gater (2017).
Gender Differences in Adiposity and its Relationship to Cardiometabolic Profiles and Proinflammatory Adipokines in Spinal Cord Injury. The FASEB Journal, 31(1_supplement), 586–11.
R.E. Andrew, A. Lauria, F.J. Puleo, A. Berg, D.B. Stewart Sr (2017).
Inpatient infliximab is ineffective at preventing colectomy for steroid refractory extensive colitis. Journal of Surgical Research, 219, 18–24. DOI

Conference Proceedings

G. Farkas, A. Gorgey, D. Dolbow, A. Berg, D. Gater (2017).
Adipose Tissue Differs and Correlates to Carbohydrate Metabolism and Proinflammatory Adipokines by Level of Spinal Cord Injury. International Journal of Exercise Science: Conference Proceedings, 9(5), 34.

2016

Journal Articles

H.R.S. Tagaram, D. Desai, G. Li, D. Liu, C.B. Rountree, K. Gowda, A. Berg, S. Amin, et al. (2016).
A selenium containing inhibitor for the treatment of hepatocellular cancer. Pharmaceuticals, 9(18), 1–14. DOI
F. He, A. Berg, Y. Imamura Kawasawa, A.C. Salzberg, E.O. Bixler, A.N. Vgontzas, D. Liao (2016).
Abstract P305: Obesity is Associated with Differentiated Methylation in Glucose Tolerance-related Genes in Adolescents. Circulation, 133(suppl_1), AP305–AP305.
F. He, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, A. Berg, Y. Imamura Kawasawa, D. Liao (2016).
Abstract P312: lack of association between habitual sleep duration and obesity measures in adolescents with adequate sleep. Circulation, 133(suppl_1), AP312–AP312.
J. Liao, D. Liao, A. Berg (2016).
Calibrated Bayes factors in assessing genetic association models. The American Statistician, 70(3), 250-256. PDF DOI
C.S. Choi, A. Berg, W. Sangster, K.M. Schieffer, L.R. Harris III, S.M. Deiling, W.A. Koltun (2016).
Combined medical and surgical approach improves healing of septic perianal Crohn’s disease. Journal of the American College of Surgeons, 223(3), 506–514. DOI
S. Ravi, R.J. Schilder, A. Berg, S.R. Kimball (2016).
Effects of age and hindlimb immobilization and remobilization on fast troponin T precursor mRNA alternative splicing in rat gastrocnemius muscle. Applied Physiology, Nutrition, and Metabolism, 41(2), 142–149. DOI
T. Connelly, B. Sanders, A. Berg, V. Williams, L. Harris, others (2016).
Genetic and Demographic Correlates of Quality of Life after Ileal Pouch Anal Anastomosis for Ulcerative Colitis. J Inflam Bowel Dis & Disord, 1(107), 2.
C. Choi, A. Berg, W. Sangster, others (2016).
Get credit right away by taking all CME tests online. J Am Coll Surg, 223, 506e514.
D.M. Karamchandani, H.L. Lehman, S.E. Ohanessian, J. Mass'e, P.A. Welsh, R.D. Odze, J.R. Goldblum, A. Berg, et al. (2016).
Increasing diagnostic accuracy to grade dysplasia in Barrett’s esophagus using an immunohistochemical panel for CDX2, p120ctn, c-Myc and Jagged1. Diagnostic Pathology, 11(23), 1–13. DOI
W. Sangster, A. Berg, C.S. Choi, T.M. Connelly, C.H. Chesnut III, W.A. Koltun, D.B. Stewart Sr (2016).
Outcomes of early ileocolectomy after percutaneous drainage for perforated ileocolic Crohn’s disease. The American Journal of Surgery, 212(4), 728–734. DOI
C. Choi, J. Coble, L. Schneper, A. Berg, L. Harris, J. Hegarty, S. Deiling, J. Broach, et al. (2016).
P-182 Examination of Crohn’s Disease Variants in a Fraternal Twin Family Using Exome Sequencing and Inflammatory Bowel Disease-Associated Single Nucleotide Polymorphisms.. Inflammatory Bowel Diseases, 22, S64–S65.
C.S. Choi, A.L. Stokes, B. Kline, J.S. Chen, A. Berg, L.R. Harris, S. Deiling, W.A. Koltun (2016).
Searching for the Genetic Determinants Affecting Diverticulitis Disease Phenotype. Journal of the American College of Surgeons, 223(4), S36.
J.J. Pu, E.L. Miller, C. Davis, A.S. Berg, M. Comito, R.J. Greiner, W.C. Ehmann, D.F. Claxton, et al. (2016).
Unrelated Donor Umbilical Cord Blood Transplantation with and without Total Body Irradiation: A Single-Center Experience. Biology of Blood and Marrow Transplantation, 22(3), S374–S375.

Conference Proceedings

C. Choi, J. Chen, T. Chan, A. Berg, D. Stewart, W. Koltun (2016).
MULTIFOCAL DIVERTICULITIS: A GENETICALLY BASED DISEASE REQUIRING EXTENDED SURGICAL RESECTION.. DISEASES OF THE COLON & RECTUM, 59(5), E165–E165.
A. Berg, F. He, E. Bixler, J. Fernandez-Mendoza, Y. Imamura, D. Liu, D. Liao (2016).
Sleep disordered breathing is associated with DNA methylation of obesity-related genes in adolescents. JOURNAL OF SLEEP RESEARCH, 25, 29–30.

2015

Journal Articles

F. He, S. Rodriguez-Colon, J. Fernandez-Mendoza, A.N. Vgontzas, E.O. Bixler, A. Berg, Y.I. Kawasawa, M.D. Sawyer, et al. (2015).
Abdominal obesity and metabolic syndrome burden in adolescents, A Penn State Children Cohort study. Journal of Clinical Densitometry, 18(1), 30–36. DOI
N.S. Yee, A.A. Kazi, Q. Li, Z. Yang, A. Berg, R.K. Yee (2015).
Aberrant over-expression of TRPM7 ion channels in pancreatic cancer: required for cancer cell invasion and implicated in tumor growth and metastasis. Biology Open, 4(4), 507–514. DOI
F. He, E.O. Bixler, J. Liao, A. Berg, Y. Imamura Kawasawa, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Abstract MP70: Habitual Sleep Variability, Mediated by Energy Intake, is Associated with Abdominal Obesity in Adolescents. Circulation, 131(suppl_1), AMP70–AMP70.
S.M. Rodr'iguez-Col'on, A. Berg, Y. Imamura Kawasawa, A. Salzberg, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Abstract MP91: Abdominal Obesity, Independent of General Obesity, is Associated With Reduced Circadian Pattern of Cardiac Autonomic Modulation in Adolescents. Circulation, 131(suppl_1), AMP91–AMP91.
A. Berg, Y.I. Kawasawa, A. Salzberg, E.O. Bixler, F. He, D. Liao (2015).
Abstract P260: obesity is associated with DNA methylation in population-based adolescents. Circulation, 131(suppl_1), AP260–AP260.
W.H. Goodson III, L. Lowe, D.O. Carpenter, M. Gilbertson, A. Manaf Ali, A. Lopez de Cerain Salsamendi, A. Lasfar, A. Carnero, et al. (2015).
Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead. Carcinogenesis, 36(Suppl 1), S254–S296. DOI
M. Dennis, C. Coleman, A. Berg, S. Kimball, others (2015).
Erratum: REDD1 enhances protein phosphatase 2A-mediated dephosphorylation of Akt to repress mTORC1 signaling (Science Signaling 7: 335 (ra68)). Science Signaling, 8(368), er4.
R.T. Wilson, J.D. Bortner Jr, A. Roff, A. Das, E.J. Battaglioli, J.P. Richie Jr, J. Barnholtz-Sloan, V.M. Chinchilli, et al. (2015).
Genetic and environmental influences on plasma vitamin D binding protein concentrations. Translational Research, 165(6), 667–676. DOI
T.M. Connelly, A. Berg, L. Harris III, D. Brinton, S. Deiling, W.A. Koltun (2015).
Genetic determinants associated with early age of diagnosis of IBD. Diseases of the Colon & Rectum, 58(3), 321–327. DOI
F. He, E.O. Bixler, J. Liao, A. Berg, Y.I. Kawasawa, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Habitual sleep variability, mediated by nutrition intake, is associated with abdominal obesity in adolescents. Sleep Medicine, 16(12), 1489–1494. DOI
F. He, E.O. Bixler, A. Berg, Y.I. Kawasawa, A.N. Vgontzas, J. Fernandez-Mendoza, J. Yanosky, D. Liao (2015).
Habitual sleep variability, not sleep duration, is associated with caloric intake in adolescents. Sleep Medicine, 16(7), 856–861. DOI
J. Coble, R.J. Schilder, A. Berg, M.J. Drummond, B.B. Rasmussen, S.R. Kimball (2015).
Influence of ageing and essential amino acids on quantitative patterns of troponin T alternative splicing in human skeletal muscle. Applied Physiology, Nutrition, and Metabolism, 40(8), 788–796. DOI
D.M. Tacelosky, D.N. Alexander, M. Morse, A. Hajnal, A. Berg, R. Levenson, P.S. Grigson (2015).
Low expression of D2R and Wntless correlates with high motivation for heroin.. Behavioral Neuroscience, 129(6), 744. DOI
R.B. Robey, J. Weisz, N.B. Kuemmerle, A.C. Salzberg, A. Berg, D.G. Brown, L. Kubik, R. Palorini, et al. (2015).
Metabolic reprogramming and dysregulated metabolism: cause, consequence and/or enabler of environmental carcinogenesis?. Carcinogenesis, 36(Suppl 1), S203–S231. DOI
J.L. Modesto, A. Hull, A.Y. Angstadt, A. Berg, C.J. Gallagher, P. Lazarus, J.E. Muscat (2015).
NNK reduction pathway gene polymorphisms and risk of lung cancer. Molecular Carcinogenesis, 54(S1), E94–E102. DOI
W. Sangster, E. Messaris, A. Berg, D.B. Stewart Sr (2015).
Single-site laparoscopic colorectal surgery provides similar clinical outcomes compared to standard laparoscopic surgery: an analysis of 626 patients. Diseases of the Colon and Rectum, 58(9), 862. DOI
T.M. Connelly, A. Berg, L.R. Harris, R. Tappouni, D. Brinton, S. Deiling, W.A. Koltun (2015).
Surgical diverticulitis is not associated with defects in the expression of wound healing genes. International Journal of Colorectal Disease, 30(9), 1247–1254. DOI
J. Foulds, S. Veldheer, S. Hrabovsky, J. Yingst, C. Sciamanna, G. Chen, J.Z. Maccani, A. Berg (2015).
The effect of motivational lung age feedback on short-term quit rates in smokers seeking intensive group treatment: a randomized controlled pilot study. Drug and Alcohol Dependence, 153, 271–277. DOI

Conference Proceedings

T. Connelly, C. Choi, A. Berg, J. Coble, W. Koltun (2015).
DIVERTICULITIS AND CROHN’S DISEASE HAVE DISTINCT BUT OVERLAPPING TUMOR NECROSIS SUPERFAMILY 15 (TNESF15) HAPLOTYPES. DISEASES OF THE COLON & RECTUM, 58(5), E95–E96.

Other

J.J. Pu, E.L. Miller, C. Davis, A.S. Berg, M. Comito, R. Greiner, W.C. Ehmann, D. Claxton, et al. (2015).
Unrelated donor umbilical cord blood transplantation with and without total body irradiation: A single-center experience.. American Society of Clinical Oncology.

2014

Journal Articles

N.S. Yee, Q. Li, A.A. Kazi, Z. Yang, A. Berg, R.K. Yee (2014).
Aberrantly over-expressed TRPM8 channels in pancreatic adenocarcinoma: Correlation with tumor size/stage and requirement for cancer cells invasion. Cells, 3(2), 500–516. DOI
T.M. Connelly, W.A. Koltun, W. Sangster, A. Berg, J.P. Hegarty, L. Harris III, S. Deiling, D.B. Stewart (2014).
An interleukin-4 polymorphism is associated with susceptibility to Clostridium difficile infection in patients with inflammatory bowel disease: results of a retrospective cohort study. Surgery, 156(4), 769–775.
J.P. Richie, A. Das, A.M. Calcagnotto, R. Sinha, W. Neidig, J. Liao, E.J. Lengerich, A. Berg, et al. (2014).
Comparative effects of two different forms of selenium on oxidative stress biomarkers in healthy men: a randomized clinical trial. Cancer Prevention Research, 7(8), 796–804. DOI
T. Connelly-conception, A. Berg, L.H. III-concept, J. Hegarty, S. Deiling, D. Brinton, D. Stewart, W. Koltun-conception (2014).
Corresponding Author and Request for Reprints.
S. Grigoryev, A. Salzberg, A. Berg, A. Harris-Becker, T. Loughran, D. Claxton (2014).
Genome-wide mapping of large organized heterochromatin domains reveals hotspots of epigenetic and transcriptional changes associated with myeloid differentiation and acute myeloid leukemia (565.1). The FASEB Journal, 28(1_supplement), 565–1.
J.S. Pogacnik, E. Messaris, S.M. Deiling, T.M. Connelly, A. Berg, D.B. Stewart, K.J. McKenna, L.S. Poritz, et al. (2014).
Increased risk of incisional hernia after sigmoid colectomy for diverticulitis compared with colon cancer. Journal of the American College of Surgeons, 218(5), 920–928. DOI
H. Lehman, P. Welsh, J. Mass'e, A. Salzberg, A. Berg, D. Stairs (2014).
Investigating the mechanisms of esophageal squamous cell carcinoma invasion (59.9). The FASEB Journal, 28(1_supplement), 59–9.
E. Popova, C. Pinzon-Guzman, A. Salzberg, A. Berg, S.S. Zhang, C.J. Barnstable (2014).
Lysine demethylase 1 is required for mouse rod photoreceptor development.. Investigative Ophthalmology & Visual Science, 55(13), 4998–4998.
T. Connelly, A. Berg, J. Hegarty, S. Deiling, D. Stewart, W. Koltun (2014).
Neoplasia in Ulcerative Colitis Patients Is Not Associated With Previously Identified Inflammatory Bowel Disease Single Nucleotide Polymorphisms. Journal of Surgical Research, 186(2), 499. DOI
S. Veldheer, J. Yingst, G. Foulds, S. Hrabovsky, A. Berg, C. Sciamanna, J. Foulds (2014).
Once bitten, twice shy: concern about gaining weight after smoking cessation and its association with seeking treatment. International Journal of Clinical Practice, 68(3), 388–395. DOI
W. Amin, F. Tsui, C. Borromeo, C.H. Chuang, J.U. Espino, D. Ford, W. Hwang, W. Kapoor, et al. (2014).
PaTH: towards a learning health system in the Mid-Atlantic region. Journal of the American Medical Informatics Association, 21(4), 633–636. DOI
N. Yee, Q. Li, A. Kazi, Z. Yang, A. Berg, S. Kimball, R. Yee (2014).
Pennsylvania State University. Hershey, PA, USA.
J. Liao, T. McMurry, A. Berg (2014).
Prior robust empirical Bayes inference for large-scale data by conditioning on rank with application to microarray data. Biostatistics, 15(1), 60-73. PDF DOI
M.D. Dennis, C.S. Coleman, A. Berg, L.S. Jefferson, S.R. Kimball (2014).
REDD1 enhances protein phosphatase 2A–mediated dephosphorylation of Akt to repress mTORC1 signaling. Science Signaling, 7(335), ra68–ra68. DOI
V. Sathyendra, H.J. Donahue, K.E. Vrana, A. Berg, D. Fryzel, J. Gandhi, J.S. Reid (2014).
Single nucleotide polymorphisms in osteogenic genes in atrophic delayed fracture-healing: a preliminary investigation. Journal of Bone & Joint Surgery, 96(15), 1242–1248. DOI
D.B. Stewart, A. Berg, J.P. Hegarty (2014).
Single nucleotide polymorphisms of the tcdC gene and presence of the binary toxin gene predict recurrent episodes of Clostridium difficile infection. Annals of Surgery, 260(2), 299–304. DOI
D.B. Stewart, A. Berg, E. Messaris (2014).
Single-site laparoscopic colorectal surgery provides similar lengths of hospital stay and similar costs compared with standard laparoscopy: results of a retrospective cohort study. Journal of Gastrointestinal Surgery, 18(4), 774–781. DOI
C. Mitchell, J. Hobcraft, S.S. McLanahan, S.R. Siegel, A. Berg, J. Brooks-Gunn, I. Garfinkel, D. Notterman (2014).
Social disadvantage, genetic sensitivity, and children’s telomere length. Proceedings of the National Academy of Sciences, 111(16), 5944–5949. DOI
T.M. Connelly, A. Berg, L.R. Harris III, J.P. Hegarty, F.M. Ruggiero, S.M. Deiling, D.L. Brinton, W.A. Koltun (2014).
T-cell activation Rho GTPase–activating protein expression varies with inflammation location and severity in Crohn’s disease. Journal of Surgical Research, 190(2), 457–464. DOI
S. Rodr'iguez-Col'on, F. He, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, A. Berg, Y.I. Kawasawa, D. Liao (2014).
The circadian pattern of cardiac autonomic modulation and obesity in adolescents. Clinical Autonomic Research, 24(6), 265–273. DOI
T. Connelly, A. Berg, E. Messaris, L. Poritz, S. Deiling, W. Koltun (2014).
The evolving role of surveillance colonoscopy and anti-TNF usage after ileocolectomy in Crohn’s Disease (CD) patients: F31. Colorectal Disease, 16.
T. Connelly, A. Berg, L. Harris, J. Hegarty, S. Deiling, D. Stewart, W. Koltun (2014).
The Expression of Colonic TAGAP is Affected By Severity of Crohn’s Disease Inflammation and The Rs212388 Allele. Journal of Surgical Research, 186(2), 499. DOI
L. Zhang, X. Ren, Y. Cheng, X. Liu, J.E. Allen, Y. Zhang, Y. Yuan, S. Huang, et al. (2014).
The NFB inhibitor, SN50, induces differentiation of glioma stem cells and suppresses their oncogenic phenotype. Cancer Biology & Therapy, 15(5), 602–611. DOI
T.M. Connelly, A. Berg, J.P. Hegarty, S. Deiling, D. Brinton, L.S. Poritz, W.A. Koltun (2014).
The TNFSF15 gene single nucleotide polymorphism rs7848647 is associated with surgical diverticulitis. Annals of Surgery, 259(6), 1132–1137. DOI
T.M. Connelly, A.S. Berg, L.R. Harris, S. Deiling, D. Brinton, W.A. Koltun (2014).
TNFSF15 mRNA Expression Is Upregulated in Sigmoid Tissue of Diverticulitis Patients. Journal of the American College of Surgeons, 219(3), S20–S21. DOI
T.M. Connelly, A. Berg, L.R. Harris III, D.L. Brinton, J.P. Hegarty, S.M. Deiling, D.B. Stewart, W.A. Koltun (2014).
Ulcerative colitis neoplasia is not associated with common inflammatory bowel disease single-nucleotide polymorphisms. Surgery, 156(2), 253–262. DOI

Conference Proceedings

T. Connelly, A. Berg, L. Harris, D. Brinton, S. Deiling, W. Koltun (2014).
GENETIC DETERMINANTS ASSOCIATED WITH EARLY AGE OF DIAGNOSIS OF INFLAMMATORY BOWEL DISEASE.. DISEASES OF THE COLON & RECTUM, 57(5), E86–E86.
T. Connelly, A. Berg, L. Harris, D. Brinton, S. Deiling, W. Koltun (2014).
SURGICAL DIVERTICULITIS IS NOT ASSOCIATED WITH DEFECTS IN EXPRESSION OF WOUND HEALING GENES. DISEASES OF THE COLON & RECTUM, 57(5), E266–E266.
T. Connelly, A. Berg, L. Harris III, D. Brinton, S. Deiling, W. Koltun (2014).
The Role of the TNFSF15 Gene in Surgical Diverticulitis. IRISH JOURNAL OF MEDICAL SCIENCE, 183, S249–S249.

Other

M.G. Kaag, J.P. Richie, A. Das, A. Calcagnotto, R. Sinha, W. Neidig, J. Liao, E.J. Lengreich, et al. (2014).
Supplementation with selenium-enriched yeast but not selenomethionine reduces oxidative stress in healthy men in a randomized clinical trial. American Association for Cancer Research.
J.J. Pu, E.L. Miller, A. Berg, M. Comito, R.J. Greiner, W.C. Ehmann, D.F. Claxton, W.B. Rybika (2014).
Utilization of Total Body Irradiation Is Not Necessary for Unrelated Donor Umbilical Cord Blood Transplants: a Single-Center Experience. American Society of Hematology Washington, DC.

2013

Journal Articles

T.M. Connelly, W.A. Koltun, A. Berg, J.P. Hegarty, D. Brinton, S. Deiling, L.S. Poritz, D.B. Stewart (2013).
A single nucleotide polymorphism in the STAT5 gene favors colonic as opposed to small-bowel inflammation in Crohn’s disease. Diseases of the Colon & Rectum, 56(9), 1068–1074. DOI
G. Liu, G. Chen, L. Sinoway, A. Berg (2013).
Assessing the impact of the NIH CTSA program on institutionally sponsored clinical trials. Clinical and Translational Science, 6(3), 196-200. PDF DOI
J.H. Ashmore, S.M. Lesko, J.E. Muscat, C.J. Gallagher, A. Berg, P.E. Miller, T.J. Hartman, P. Lazarus (2013).
Association of dietary and supplemental folate intake and polymorphisms in three FOCM pathway genes with colorectal cancer in a population-based case-control study. Genes, Chromosomes and Cancer, 52(10), 945–953. DOI
L.S. Poritz, R. Sehgal, A. Berg, L. Laufenberg, C. Choi, E.D. Williams (2013).
Chronic Use of PPI and H\(_2\) Antagonists Decreases the Risk of Pouchitis After IPAA for Ulcerative Colitis. Journal of Gastrointestinal Surgery, 17(6), 1027–1031. DOI
J. Foulds, C. Russ, C. Yu, K.H. Zou, A. Galaznik, M. Franzon, A. Berg, J.R. Hughes (2013).
Effect of varenicline on individual nicotine withdrawal symptoms: a combined analysis of eight randomized, placebo-controlled trials. Nicotine & Tobacco Research, 15(11), 1849–1857. DOI
D.R. Masser, A. Berg, W.M. Freeman (2013).
Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing. Epigenetics & Chromatin, 6(1), 33. DOI
A. Sharma, S.V. Madhunapantula, R. Gowda, A. Berg, R.I. Neves, G.P. Robertson (2013).
Identification of Aurora Kinase B and Wee1-Like Protein Kinase as Downstream Targets of V600EB-RAF in Melanoma. The American Journal of Pathology, 182(4), 1151–1162. DOI
Y. Sun, J.B. Guttenplan, T. Cooper, J. Krzeminski, C. Aliaga, T. Boyiri, W. Kosinska, Z. Zhao, et al. (2013).
Mechanisms underlying the varied mammary carcinogenicity of the environmental pollutant 6-nitrochrysene and its metabolites (-)-[R,R]- and (+)-[S,S]-1, 2-dihydroxy-1, 2-dihydro-6-nitrochrysene in the rat. Chemical Research in Toxicology, 26(4), 547–554. DOI
V.A. Canfield, A. Berg, S. Peckins, S.M. Wentzel, K.C. Ang, S. Oppenheimer, K.C. Cheng (2013).
Molecular phylogeography of a human autosomal skin color locus under natural selection. G3: Genes, Genomes, Genetics, 3(11), 2059–2067. DOI
Z. Lin, J.P. Hegarty, G. John, A. Berg, Z. Wang, R. Sehgal, D.M. Pastor, Y. Wang, et al. (2013).
NOD2 mutations affect muramyl dipeptide stimulation of human B lymphocytes and interact with other IBD-associated genes. Digestive Diseases and Sciences, 58(9), 2599–2607. DOI
T. Connelly, B. Sanders, A. Berg, L. Harris III, A. Tinsley, E. Williams, W. Koltun (2013).
O-019 YI Genetic Predictors of Quality of Life Post Ileal Anal Pouch Anastomosis for Ulcerative Colitis. Inflammatory Bowel Diseases, 19(suppl_1), S13–S14.
D.B. Stewart, A. Berg, J. Hegarty (2013).
Predicting recurrence of C. difficile colitis using bacterial virulence factors: binary toxin is the key. Journal of Gastrointestinal Surgery, 17(1), 118–125. DOI
E. Hammett, S. Veldheer, S.H. RD, J. Yingst, A. Berg, E. Poole, D. Stauffer (2013).
Related Articles from PubMed. BMJ, 347, f4004.
A.Y. Angstadt, A. Berg, J. Zhu, P. Miller, T.J. Hartman, S.M. Lesko, J.E. Muscat, P. Lazarus, et al. (2013).
The effect of copy number variation in the phase II detoxification genes UGT2B17 and UGT2B28 on colorectal cancer risk. Cancer, 119(13), 2477–2485. DOI

Conference Proceedings

T.E. Spratt, A. Gowda, A. Salzberg, A. Berg, C. Song, S.S. Dovat (2013).
Binding of benzo [a] pyrene diol epoxide to the genome. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 246.
T. Connelly, A. Berg, L. Harris, J. Hegarty, S. Deiling, W. Koltun (2013).
Mutation in TAGAP is Protective of Anal Sepsis in Crohn’s Disease. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S342–S342. DOI
R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2013).
NOD2/CARD15 mutations correlate with severe pouchitis after Ileal pouch-anal anastomosis. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S37–S37.
T. Connelly, A. Berg, J. Hegarty, S. Deiling, L. Harris, D. Brinton, L. Poritz, W. Koltun (2013).
POLYMORPHISM WITHIN THE TNFSF15 GENE IS ASSOCIATED WITH DIVERTICULITIS REQUIRING SURGICAL INTERVENTION: A CONFIRMATORY STUDY. DISEASES OF THE COLON & RECTUM, 56(4), E73–E74.
R. Sehgal, A. Berg, R. Figueroa, L. Poritz, K. McKenna, D. Stewart, W. Koltun (2013).
Risk factors for surgical site infections after colorectal resection in diabetic patients. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S74–S74.
J. Salgado, S. Deiling, A. Berg, D. Stewart, E. Messaris, K. McKenna, L. Poritz, W. Koltun (2013).
RISK OF INCISIONAL HERNIA IS HIGHER AFTER COLECTOMY DONE FOR DIVERTICULITIS VERSUS CANCER.. DISEASES OF THE COLON & RECTUM, 56(4), E119–E119.

Other

D. Liao, F. He, A. Berg, A.N. Vgontzas, J. Julio Fernandez-Mendoza, E.O. Bixler (2013).
Abstract P197: Sleep Variability and Cardiac Arrhythmia in Adolescents-Penn State Child Cohort (PSCC) Study. Lippincott Williams & Wilkins.
J.H. Ashmore, A. Berg, C. Gallagher, P. Miller, J. Muscat, J. Zhu, T. Hartman, P. Lazarus, et al. (2013).
Association of dietary and supplemental folate intake and polymorphisms of the MTHFR, MTHFD1, and TYMS genes and colorectal cancer in a population-based study. Federation of American Societies for Experimental Biology.
J.J. Pu, G.R. Rivera, A. Sido, A. Berg, C. Boyer, M.G. Bayerl (2013).
Comparison Of Lymphocytic Immune Profiles Of Aplastic Anemia and Hypocellular Myelodysplastic Syndrome. American Society of Hematology Washington, DC.
S. Zhang, K. Chen, J.R. Richie, A. Calcagnotto, C. Aliaga, A. Berg, Y. Sun, A.K. Sharma, et al. (2013).
Effect of alcohol on DB [a, l] P, an environmental pollutant and a tobacco smoke constituent, on DNA adduct formation in mouse oral tissues.. American Association for Cancer Research.
K. Chen, S. Zhang, C. Aliaga, Y. Sun, A. Berg, A. Sharma, S. Amin, G. Stoner, et al. (2013).
Effects of black raspberry and related components on DB [a, l] P-induced DNA adduct formation in mouse oral tissues.. American Association for Cancer Research.

2012

Journal Articles

L.S. Poritz, L.R. Harris, A. Berg, T.M. Connelly, J.P. Hegarty, S. Deiling, Z. Lin, R. Sehgal (2012).
531 Mutation in ZO-1 is Associated With Protection From Familial Inflammatory Bowel Disease. Gastroenterology, 142(5), S–1029.
L.S. Poritz, A. Berg (2012).
532 Ostomy Creation Significantly Increases ER Visits and Hospital Readmission After Colorectal Resection. Gastroenterology, 142(5), S–1029.
G.A. Clawson, E. Kimchi, S.D. Patrick, P. Xin, R. Harouaka, S. Zheng, A. Berg, T. Schell, et al. (2012).
Circulating tumor cells in melanoma patients. PLoS ONE, 7(7). DOI
L. Hou, L. Wang, A. Berg, M. Qian, Y. Zhu, F. Li, M. Deng (2012).
Comparison and evaluation of network clustering algorithms applied to genetic interaction networks. Frontiers in Bioscience, 4, 2150–2161. DOI
J. Foulds, S. Veldheer, A. Berg (2012).
Electronic cigarettes: a response to Leelavathi and Das. International Journal of Clinical Practice, 66(4), 417–418. DOI
Z.R. Tsetskhladze, V.A. Canfield, K.C. Ang, S.M. Wentzel, K.P. Reid, A. Berg, S.L. Johnson, K. Kawakami, et al. (2012).
Functional assessment of human coding mutations affecting skin pigmentation using zebrafish. PLoS ONE, 7(10). DOI
R. Sehgal, A. Berg, J.I. Polinski, J.P. Hegarty, Z. Lin, K.J. McKenna, D.B. Stewart, L.S. Poritz, et al. (2012).
Genetic risk profiling and gene signature modeling to predict risk of complications after IPAA. Diseases of the Colon & Rectum, 55(3), 239–248. DOI
J. Kreiss, S.N. Lahiri, T. Rao, S. Rao, C. Rao (2012).
Handbook of statistics. S. Subba Rao T. Subba Rao & C. Rao (Eds.), 3–26.
J. Weisz, D.A. Shearer, E. Murata, S.D. Patrick, B. Han, A. Berg, G.A. Clawson (2012).
Identification of mammary epithelial cells subject to chronic oxidative stress in mammary epithelium of young women and teenagers living in USA: implication for breast carcinogenesis. Cancer Biology & Therapy, 13(2), 101–113. DOI
T.M. Connelly, R. Sehgal, A. Berg, J.P. Hegarty, S. Deiling, D.B. Stewart, L.S. Poritz, W.A. Koltun (2012).
Mutation in TAGAP is protective of anal sepsis in ileocolic Crohn’s disease. Diseases of the Colon & Rectum, 55(11), 1145–1152. DOI
R. Sehgal, A. Berg, J.I. Polinski, J.P. Hegarty, Z. Lin, K.J. McKenna, D.B. Stewart, L.S. Poritz, et al. (2012).
Mutations in IRGM are associated with more frequent need for surgery in patients with ileocolonic Crohn’s disease. Diseases of the Colon & Rectum, 55(2), 115–121. DOI
A. Rotramel, L.S. Poritz, E. Messaris, A. Berg, D.B. Stewart (2012).
PPI therapy and albumin are better predictors of recurrent Clostridium difficile colitis than choice of antibiotics. Journal of Gastrointestinal Surgery, 16(12), 2267–2273. DOI
W. Yu, J.P. Hegarty, A. Berg, A.A. Kelly, Y. Wang, L.S. Poritz, A. Franke, S. Schreiber, et al. (2012).
PTPN2 is associated with Crohn’s disease and its expression is regulated by NKX2-3. Disease Markers, 32(2), 83–91. DOI
D.M. Avella, G. Li, T.D. Schell, D. Liu, S.S. Zhang, X. Lou, A. Berg, E.T. Kimchi, et al. (2012).
Regression of established hepatocellular carcinoma is induced by chemoimmunotherapy in an orthotopic murine model. Hepatology, 55(1), 141–152. DOI
T.M. Connelly, J.P. Hegarty, A. Berg, Z. Lin, S. Deiling, Y. Wang, W.A. Koltun (2012).
Single nucleotide polymorphisms (SNPs) of TNFSF15 are associated with surgical diverticulitis. Journal of the American College of Surgeons, 215(3), S32.
K.C. Ang, M.S. Ngu, K.P. Reid, M.S. Teh, Z.S. Aida, D.X. Koh, A. Berg, S. Oppenheimer, et al. (2012).
Skin color variation in Orang Asli tribes of Peninsular Malaysia. PLoS ONE, 7(8). DOI
D. Liao, A. Berg, W. Freeman, M. Shaffer, A. Vgontzas, S. Calhoun, E. Bixler (2012).
Sleep variability and cardiac arrhythmia in adolescents-Penn State Child Cohort Study: O246. Journal of Sleep Research, 21(1).
E.Y. Popova, X. Xu, A.T. DeWan, A.C. Salzberg, A. Berg, J. Hoh, S.S. Zhang, C.J. Barnstable (2012).
Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo. PLoS ONE, 7(10). DOI
E. Messaris, A. Berg, D.B. Stewart (2012).
Su1507 Single-Site Laparoscopic Colorectal Surgery Provides Similar Costs to Patients and Hospitals Compared to Standard Laparoscopic Surgery. Gastroenterology, 142(5), S–1051.
A. Berg, T. McMurry, D.N. Politis (2012).
Testing time series linearity: Traditional and bootstrap methods. Handbook of Statistics, 30, 27-42. PDF DOI
J. Kreiss, S.N. Lahiri, A. Berg, T. McMurry, D.N. Politis, S. Giannerini, D. Tj, J. Franke, et al. (2012).
Time Series Analysis: Methods and Applications. North-Holland.

Conference Proceedings

T. Connelly, R. Sehgal, C. Choi, D. Brinton, A. Berg, S. Deiling, L. Poritz, W. Koltun (2012).
ATG16L1 Polymorphism is Associated with Increased Risk of Emergency Colectomy in Ulcerative Colitis. IRISH JOURNAL OF MEDICAL SCIENCE, 181, S174–S175.
Y. Sun, J.B. Guttenplan, T. Cooper, C. Aliaga, J. Krzeminski, K. Chen, A. Berg, S. Amin, et al. (2012).
Comparable mutagenicity and carcinogenicity of (-)-[R, R]-and (+)-[S, S]-trans-1, 2-dihydro-1, 2-dihydroxy6-nitrochrysene in the rat mammary gland. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 244.
R. Sehgal, A. Berg, J. Polinski, J. Hegarty, Z. Lin, K. McKenna, D. Stewart, L. Poritz, et al. (2012).
Mutations in IRGM are Associated with More Frequent Need for Surgery in Patients with Ileocolonic Crohn’s Disease (CD). IRISH JOURNAL OF MEDICAL SCIENCE, 181, S184–S184.

Other

R.T. Wilson, J.D. Bortner, A. Berg, A. Roff, A. Das, J. Richie, J. Barnholtz-Sloan, K. El-Bayoumy (2012).
Cigarette smoking, race, and genetic ancestry in association with plasma vitamin D-binding protein (VDBP) in healthy African Americans (AA) and Caucasian Americans (CA). American Association for Cancer Research.

2011

Journal Articles

M.V. Raval, P.W. Dillon, J.L. Bruny, C.Y. Ko, B.L. Hall, R.L. Moss, K.T. Oldham, K.E. Richards, et al. (2011).
1 American College of Surgeons National Surgical Quality Improvement Program Pediatric: A Phase 1 Report.
G. Fu, J. Luo, A. Berg, Z. Wang, J. Li, K. Das, R. Li, R. Wu (2011).
A dynamic model for functional mapping of biological rhythms. Journal of Biological Dynamics, 5(1), 84–101. DOI
R. Sehgal, J. Polinski, A. Berg, J. Hegarty, A. Kelly, S. Deiling, W. Yu, Z. Lin, et al. (2011).
Association of the IL12-IL23-JAK2 inflammatory cascade with anal disease in patients with ileocolonic Crohn’s disease. P-019.. Inflammatory Bowel Diseases, 17(suppl_1), S17–S17.
N.R. Jones, T.E. Spratt, A. Berg, J.E. Muscat, P. Lazarus, C.J. Gallagher (2011).
Association studies of excision repair cross-complementation group 1 (ERCC1) haplotypes with lung and head and neck cancer risk in a Caucasian population. Cancer Epidemiology, 35(2), 175–181. DOI
R. Sehgal, A. Berg, J. Polinski, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
Correlation Of Gene Haplotypes With Complications After Ileal Pouch Anal Anastomosis. Journal of Surgical Research, 165(2), 211–212.
Z. Lin, J.P. Hegarty, A. Berg, Z. Wang, Y. Wang, R. Wu, A. Kelly, L. Poritz, et al. (2011).
DLG5 P1371Q is associated with inflammatory bowel disease and complementary to R30Q in disease susceptibility. Swiss Medical Weekly, 141(w13290), 1-7. DOI
J. Foulds, S. Veldheer, A. Berg (2011).
Electronic cigarettes (e-cigs): views of aficionados and clinical/public health perspectives. International Journal of Clinical Practice, 65(10), 1037–1042. DOI
A. Berg, N. Li, C. Tong, Z. Wang, S. Berceli, R. Wu (2011).
Functional mapping of expression quantitative trait loci that regulate oscillatory gene expression. Methods Mol Biol, 734, 241-255. PDF DOI
Z. Lin, G. John, J.P. Hegarty, A. Berg, W. Yu, Y. Wang, A.A. Kelly, B.Z. Peterson, et al. (2011).
Genetic Variants and Monoallelic Expression of Surfactant Protein-D in Inflammatory Bowel Disease. Annals of Human Genetics, 75(5), 559–568. DOI
R. Sehgal, A. Berg, R. Figueroa, others (2011).
JACS Category 1 CME Credit Featured Articles, Volume 212, January 2011. J Am Coll Surg, 212, 119–123.
W. Yu, J.P. Hegarty, A. Berg, X. Chen, G. West, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2011).
NKX2-3 transcriptional regulation of endothelin-1 and VEGF signaling in human intestinal microvascular endothelial cells. PLoS ONE, 6(5), e20454: 1–10. DOI
G. John, J.P. Hegarty, W. Yu, A. Berg, D.M. Pastor, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2011).
NKX2-3 variant rs11190140 is associated with IBD and alters binding of NFAT. Molecular Genetics and Metabolism, 104(1-2), 174–179. DOI
G. Ramesh, A. Berg, C. Jayakumar (2011).
Plasma netrin-1 is a diagnostic biomarker of human cancers. Biomarkers, 16(2), 172–180. DOI
J. Cupp, Z. Simmons, A. Berg, S.H. Felgoise, S.M. Walsh, H.E. Stephens (2011).
Psychological health in patients with ALS is maintained as physical function declines. Amyotrophic Lateral Sclerosis, 12(4), 290–296. DOI
R. Sehgal, A. Berg, R. Figueroa, L.S. Poritz, K.J. McKenna, D.B. Stewart, W.A. Koltun (2011).
Risk factors for surgical site infections after colorectal resection in diabetic patients. Journal of the American College of Surgeons, 212(1), 29–34. DOI
A.K. Sharma, C.L. Kline, A. Berg, S. Amin, R.B. Irby (2011).
The Akt inhibitor ISC-4 activates prostate apoptosis response protein-4 and reduces colon tumor growth in a nude mouse model. Clinical Cancer Research, 17(13), 4474–4483. DOI
L.S. Poritz, R. Sehgal, K. Hartnett, A. Berg, W.A. Koltun (2011).
Tumor volume and percent positive lymph nodes as a predictor of 5-year survival in colorectal cancer. Surgery, 150(4), 649–655. DOI

Conference Proceedings

R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
Gene Signature Modeling to Predict Risk of Crohn’s Disease (CD) like Complications or Severe Pouchitis (SP) after Ileal Pouch Anal Anastomosis (IPAA). DISEASES OF THE COLON & RECTUM, 54(5), E15–E16.
R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
MUTATIONS IN IRGM ARE ASSOCIATED WITH MORE FREQUENT NEED FOR SURGERY IN ILEOCOLONIC CROHN’S DISEASE (CD) PATIENTS.. DISEASES OF THE COLON & RECTUM, 54(5), E15–E15.

2010

Journal Articles

A. Berg, E. Paparoditis, D.N. Politis (2010).
A bootstrap test for time series linearity. Journal of Statistical Planning and Inference, 140(12), 3841-3857. PDF DOI
G. Fu, A. Berg, K. Das, L. Jiahan, L. Runze, R. Wu (2010).
A statistical model for mapping morphological shape. Theoretical Biology and Medical Modelling, 7(28), 1–14. DOI
A. Berg, K. Suaray (2010).
Bootstrap bandwidth selection for a smooth survival function estimator from censored data. Journal of Statistical Research, 44(2), 207-217. PDF
D.R. Drost, C.I. Benedict, A. Berg, E. Novaes, C.R. Novaes, Q. Yu, C. Dervinis, J.M. Maia, et al. (2010).
Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus. Proceedings of the National Academy of Sciences, 107(18), 8492–8497. DOI
N. Li, T. McMurry, A. Berg, Z. Wang, S.A. Berceli, R. Wu (2010).
Functional clustering of periodic transcriptional profiles through ARMA(p, q). PLoS ONE, 5(4). DOI
J. Luo, A. Berg, K. Ahn, K. Das, J. Li, Z. Wang, Y. Li, R. Wu (2010).
Functional genomewide association studies of longitudinal traits. Handbook of Adaptive Designs in Pharmaceutical and Clinical Development, 402–415. DOI
K. Ahn, J. Luo, A. Berg, D. Keefe, R. Wu (2010).
Functional mapping of drug response with pharmacodynamic–pharmacokinetic principles. Trends in Pharmacological Sciences, 31(7), 306–311. DOI
G. Chen, N.E. Giambrone, D.F. Dluzen, J.E. Muscat, A. Berg, C.J. Gallagher, P. Lazarus (2010).
Glucuronidation genotypes and nicotine metabolic phenotypes: importance of functional UGT2B10 and UGT2B17 polymorphisms. Cancer Research, 70(19), 7543–7552. DOI
Q. He, A. Berg, Y. Li, C.E. Vallejos, R. Wu (2010).
Mapping genes for plant structure, development and evolution: functional mapping meets ontology. Trends in Genetics, 26(1), 39–46. DOI
Y. Li, A. Berg, L.R. Wu, Z. Wang, G. Chen, R. Wu (2010).
Modeling the aneuploidy control of cancer. BMC Cancer, 10(346), 1–9. DOI
M. Lin, A. Berg, R. Wu (2010).
Modeling the Genetic Etiology of Pharmacokinetic–Pharmacodynamic Links with the ARMA Process. Journal of Biopharmaceutical Statistics, 20(2), 351–372. DOI
R. Sehgal, A. Berg, J.P. Hegarty, A.A. Kelly, Z. Lin, L.S. Poritz, W.A. Koltun (2010).
NOD2/CARD15 mutations correlate with severe pouchitis after ileal pouch-anal anastomosis. Diseases of the Colon & Rectum, 53(11), 1487–1494. DOI
A. Berg, T.L. McMurry, D.N. Politis (2010).
Subsampling p-values. Statistics and Probability Letters, 80, 1358-1364. PDF DOI
A. Berg, Q. He, Y. Shen, Y. Chen, M. Huang, R. Wu (2010).
Trilocus disequilibrium analysis of multiallelic markers in outcrossing populations. Statistical Applications in Genetics and Molecular Biology, 9(1), 1-22. PDF DOI
Z. Lin, G. John, J.P. Hegarty, A. Berg, T. Li, D.M. Pastor, A.A. Kelly, Y. Wang, et al. (2010).
W1236 NOD2 Mutations Compromise Host Defense Mechanisms to Enteric Bacteria as Shown by Decreased NF-kB in Human B Cells After Muramyl Dipeptide (MDP) Stimulation. Gastroenterology, 138(5), S–680.
G. John, Z. Lin, J.P. Hegarty, A. Berg, D.M. Pastor, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2010).
W1247 Nkx2-3 Variant Rs11190140 is Associated With IBD and Alters NFAT Transcription Factor Binding. Gastroenterology, 138(5), S–683.
B. Kim, T. McMurry, W. Zhao, R. Wu, A. Berg (2010).
Wavelet-based functional clustering for patterns of high-dimensional dynamic gene expression. Journal of Computational Biology, 17(8), 1067-1080. PDF DOI

Conference Proceedings

R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2010).
NOD2 MUTATIONS CORRELATE WITH SEVERE POUCHITIS AFTER ILEAL POUCH-ANAL ANASTOMOSIS. DISEASES OF THE COLON & RECTUM, 53(4), 542–542.

2009

Journal Articles

Y. Li, A. Berg, M.N. Chang, P. Du, K. Ahn, D. Mauger, D. Liao, R. Wu (2009).
A statistical model for genetic mapping of viral infection by integrating epidemiological behavior. Statistical Applications in Genetics and Molecular Biology, 8(1), 38: 1–22. DOI
I. Abramson, A. Berg (2009).
An occupancy problem arising in power law fitting. Internet Mathematics, 6(1), 19-28. PDF DOI
A. Berg, D. Politis (2009).
CDF and survival function estimation with infinite-order kernels. Electronic Journal of Statistics, 3, 1436-1454. PDF DOI
Y. Cheng, A. Berg, S. Wu, Y. Li, R. Wu (2009).
Computing genetic imprinting expressed by haplotypes. Methods Mol Biol, 189–212. DOI
Q. He, Y. Shen, Y. Chen, Y. Zhou, A. Berg, R. Wu, M. Huang (2009).
Development of 16 polymorphic simple sequence repeat markers for Lycoris longituba from expressed sequence tags. Molecular Ecology Resources, 9(1), 278–280. DOI
R. Wu, A. Berg, Q. Li (2009).
Discussion: Why do we test multiple traits in genetic association studies?. Journal of the Korean Statistical Society, 1(38), 11–13. DOI
A. Berg, D. Politis (2009).
Higher-order accurate polyspectral estimation with flat-top lag-windows. Annals of the Institute of Statistical Mathematics, 61(2), 477-498. PDF DOI
A. Berg (2009).
International Workshop on Statistical & Computational Genetics: Computational Workbook using R.
S. Wen, C. Wang, A. Berg, Y. Li, M.M. Chang, R.B. Fillingim, M.R. Wallace, R. Staud, et al. (2009).
Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data. Algorithms for Molecular Biology, 4(11), 1–11. DOI
W. Hou, T. Liu, Y. Li, Q. Li, J. Li, K. Das, A. Berg, R. Wu (2009).
Multilocus genomics of outcrossing plant populations. Theoretical Population Biology, 76(1), 68–76. DOI
S. Wu, J.S. Yap, Y. Li, Q. Li, G. Fu, J. Li, K. Das, A. Berg, et al. (2009).
Network models for dissecting plant development by functional mapping. Current Bioinformatics, 4(3), 183–187. DOI

2008

Journal Articles

B. Kim, L. Zhang, A. Berg, J. Fan, R. Wu (2008).
A computational approach to the functional clustering of periodic gene-expression profiles. Genetics, 180(2), 821–834. DOI
C. Ma, Q. Yu, A. Berg, D. Drost, E. Novaes, G. Fu, J.S. Yap, A. Tan, et al. (2008).
A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait. Genetics, 179(1), 627–636. DOI
A. Berg (2008).
Multivariate lag-windows and group representations. Journal of Multivariate Analysis, 99(10), 2479-2496. PDF DOI
B. Brumback, A. Berg (2008).
On effect-measure modification: Relationships among changes in the relative risk, odds ratio, and risk difference. Statistics in Medicine, 27(18), 3453–3465. PDF DOI

2007

Journal Articles

D.L. Kane, D. Kilb, A. Berg, V.G. Martynov (2007).
Quantifying the remote triggering capabilities of large earthquakes using data from the ANZA Seismic Network catalog (southern California). Journal of Geophysical Research: Solid Earth, B11302(1–14). DOI

2006

Journal Articles

A. Berg, D. Politis (2006).
Higher-Order estimation of s-th order spectra with flat-top lag-windows. arXiv preprint math/0612681.

2005

Conference Proceedings

D. Kane, D. Kilb, A. Berg, V. Martynov (2005).
Quantifying Properties Of Triggering (Non-Triggering) Local Mainshock/Aftershock Sequences: Establishing Thresholds That Can Be Applied To Remote Mainshock/Aftershock Triggering Studies. AGU Fall Meeting Abstracts.