Research

Publications, grants, and protocols across methodological biostatistics and applied collaborations — use the filter bar to browse by type and research area.

My research portfolio has two strands that continuously inform each other:

For the pediatric-oncology clinical-trial portfolio, see the Beat Childhood Cancer page.

Download full CV (PDF) ORCID Penn State Pure Google Scholar

273publications
66grants
17protocols

Publications

2025

Journal Articles

N.S. Yee, A. Berg, A.B. Benson, A. Turk, P.M. Boland, C. Peterson (2025).
A phase II study of liposomal irinotecan in combination with oxaliplatin, leucovorin, and 5-fluorouracil (NALIRIFOX) in locally advanced pancreatic carcinoma: BTCRC-GI15-067. JCO Oncology Advances.
Adult Oncology
J.S. Brenman, A. Berg, A.W. Heinemann, Y. Chen, E.R. Felix, G.J. Farkas (2025).
Associations Between Obesity and Cardiometabolic, Physical, and Psychosocial Health in Chronic Traumatic Spinal Cord Injury. Archives of Physical Medicine and Rehabilitation. DOI
Clinical ResearchSpinal Cord Injury
G.J. Farkas, L.J. Caldera, D.D. Hodgkiss, J.R. Mitchell, T.F. Pelaez, M.A. Cusnier, A.J. Cole, S.G. Daniel, et al. (2025).
Cardiometabolic Risk in Chronic Spinal Cord Injury: A Systematic Review with Meta-Analysis and Temporal and Geographical Trends. Journal of clinical medicine, 14(2872), 1-31.
Clinical ResearchSpinal Cord Injury
A.T. Lato, A. Berg, J.A. Parascando, S.F. Phillips, C.A. Onks, J.R. Loeffert (2025).
Enhancing Knowledge and Confidence in Wilderness Medicine Through Virtual Education: Lessons From a National Boot Camp. Cureus, 17(2).
Clinical Research
A. Berg (2025).
Entropy-based Sound-Character Mapping for Chinese Character Learning. International Journal of Chinese Language Teaching, 6(2), 63-89. PDF DOI Supplement
Information TheoryMethodology
G.J. Farkas, P.M. Cunningham, A. Berg, G. Jimsheleishvili, A.J. Mendez, D.R. Gater, M.S. Nash, B.J. Rolls (2025).
Gastrointestinal dysmotility and impaired gut peptide-satiety coupling in men with spinal cord injury. Physiology & Behavior, 305, 115207. DOI
Clinical ResearchSpinal Cord Injury
Z. Donato, A. Levy, A. Sneij, S. LaVela, A. Berg, L. Shapiro, G. Farkas (2025).
Grocery Shopping Behavior and Eating Behavior Differ Between Persons with and without a Spinal Cord Injury. Topics in Spinal Cord Injury Rehabilitation, 31(1), 66-76.
Clinical ResearchSpinal Cord Injury

2024

Journal Articles

N. Hawila, A. Berg (2024).
Bayesian Joint Modeling of Interrater and Intrarater Reliability with Multilevel Data. Asian Journal of Statistics and Applications, 1(1), 85-99. PDF DOI
BayesianMethodology
A. Berg (2024).
Causal inference from high-dimensional static data in soil microbiota networks: Comment on “Topological change of soil microbiota networks for forest resilience under global warming” by Gong et al. Physics of life reviews, 51, 281-282. PDF DOI
MethodologyStatistical Genetics
E. Allen, E. Goldstein, R. Lennon, A. Berg, C. Regner, R. Eiden, D. Symons Downs, J. Neiderhiser, et al. (2024).
COVID-19 pandemic-related perceived loneliness as a potential risk factor for worse outcomes among people who are pregnant or postpartum. Wisconsin Medical Journal, 123(6), 515-520.
Clinical Research
D. McGuire, H. Markus, L. Yang, J. Xu, A. Montgomery, A. Berg, Q. Li, L. Carrel, et al. (2024).
Dissecting heritability, environmental risk, and air pollution causal effects using> 50 million individuals in MarketScan. Nature communications, 15(1), 5357. DOI
Statistical Genetics
A. Berg (2024).
Quantitative Methods for Precision Medicine: Pharmacogenomics in Action: Rongling Wu, Boca Raton, FL: Chapman & Hall/CRC Press. Journal of the American Statistical Association, 119(546), 1690-1691. PDF DOI
Methodology
G.J. Farkas, A. Berg, A. Sneij, D.R. Dolbow, A.S. Gorgey, D.R. Gater (2024).
The comparison of total energy and protein intake relative to estimated requirements in chronic spinal cord injury. British Journal of Nutrition, 131(3), 489–499. DOI
Spinal Cord Injury
C. Onks, L. Weaver, J. Latorre, M. Silvis, A. Berg, S. Phillips, J. Loeffert, C. French, et al. (2024).
The most effective corticosteroid dose in the treatment of glenohumeral osteoarthritis: Feasibility pilot and protocol for double blinded randomized controlled trial. Osteoarthritis and Cartilage Open, 6(3), 100484. DOI
Clinical Research
V. Vangala, Y. Chen, S.S. Dinavahi, K. Gowda, N.A. Lone, M. Herlyn, J. Drabick, K. Helm, et al. (2024).
Tumor Heterogeneity Shapes Survival Dynamics in Drug-Treated Cells, Revealing Size-Drifting Subpopulations. ACS Pharmacology & Translational Science, 7(11), 3573-3584.
Adult Oncology
M.E. Healy, L.H. Messer, M.G. Stasinopoulos, S.E. Brewer, A. Berg, T.K. Oser (2024).
Understanding patient and health care provider perceptions of barriers and facilitators to diabetes care in immigrant and refugee populations. Discover Public Health, 21(88), 1-12. DOI
Clinical Research

2023

Journal Articles

A. Darby, J.A. Parascando, M. Lipinski, C. Lipinski, M. Mendez-Miller, A. Berg, D. Rabago, T.K. Oser (2023).
Awareness and interest in osteopathic manipulative treatment in allopathic medical students. Journal of Osteopathic Medicine, 123(8), 379-384. DOI
Clinical ResearchMethodologyStatistics Education
N. Hawila, A. Berg (2023).
Exact-corrected confidence interval for risk difference in noninferiority binomial trials. Biometrics, 79(2), 1133-1144. PDF DOI
Clinical TrialsMethodology
K. Karpa, J. Ward, M. Stegman, A. Berg, S.L. Leong (2023).
IPEx: A gamification tool for learner application of pharmacologic principles of opioid use, misuse, and addiction. Pharmacology Research & Perspectives, 11(5), e01141. DOI
Clinical Research
M. Larsen, F. He, Y.I. Kawasawa, A. Berg, A.N. Vgontzas, D. Liao, E.O. Bixler, J. Fernandez-Mendoza (2023).
Objective and subjective measures of sleep initiation are differentially associated with DNA methylation in adolescents. Clinical Epigenetics, 15, 136. DOI
Clinical ResearchStatistical Genetics
G.J. Farkas, P.M. Cunningham, A.M. Sneij, J.E. Hayes, M.S. Nash, A. Berg, D.R. Gater, B.J. Rolls (2023).
Reasons for meal termination, eating frequency, and typical meal context differ between persons with and without a spinal cord injury. Appetite, 192(107110), 1-9. DOI
Clinical ResearchSpinal Cord Injury
M.M. Mankarious, A.J. Hughes, A. Berg, J.S. Scow, A.N. Jeganathan, A.S. Kulaylat, M.J. Deutsch (2023).
Survival outcomes of anal adenocarcinoma versus rectal adenocarcinoma: A retrospective cohort study. Indian Journal of Gastroenterology, 42, 694-700. DOI
Adult OncologyClinical Research
G.J. Farkas, A. Berg, A. Sneij, D.R. Dolbow, A.S. Gorgey, D.R. Gater (2023).
The comparison of total energy and protein intake relative to estimated requirements in chronic spinal cord injury. British Journal of Nutrition, 1–11. DOI
Spinal Cord Injury
H. Wang, K.N. Berger, E.L. Miller, W. Fu, L. Broglie, F.D. Goldman, H. Konig, S.J. Lim, et al. (2023).
The impacts of total body irradiation on umbilical cord blood hematopoietic stem cell transplantation. Therapeutic Advances in Hematology, 14, 1-13. DOI
Pediatric Oncology
S.A. Walser, H. Costigan, H.L. Stuckey, A. Berg, M.B. Stephens (2023).
The Opaque Language of Sexuality: Medical Students’ and Providers’ Beliefs About Virginity. Archives of Sexual Behavior, 52, 2619–2638. DOI
MethodologyStatistics Education
F. Satriale, J.C. Garman, S. Roy, J. Parascando, A. Berg, T. Oser (2023).
Understanding Nutritional Knowledge and Experiences in Families with a Child Newly Diagnosed with Type 1 Diabetes. Diabetes Spectrum, 36(1), 52-58.
Clinical Research

2022

Journal Articles

G.J. Farkas, A. Swartz, A. Gorgey, A. Berg, D. Gater (2022).
Acute exercise improves glucose effectiveness but not insulin sensitivity in paraplegia. Disability and Rehabilitation, 44(17), 4656-4662. DOI
Clinical ResearchSpinal Cord Injury
T.D. Riley, J.A. Radico, J. Parascando, A. Berg, T.K. Oser (2022).
Challenges in Effective Faculty and Provider Recognition to Enhance Engagement. Family Medicine, 54(6), 461-465. DOI
Clinical Research
C. Tom, N. Jeganathan, M. Deutsch, W. Koltun, A. Berg, J. Scow (2022).
Characteristics and Outcomes of Right- Versus Left-Sided Early Onset Colorectal Cancer. Diseases of the Colon and Rectum. DOI
Adult OncologyClinical Research
L. Lafferty, J. Wawrzyniak, M. Chambers, T. Pagliarulo, A. Berg, N. Hawila, M. Silvis (2022).
Clinical indoor running gait analysis may not approximate outdoor running gait based on novel drone technology. Sports health, 14(5), 710–716. DOI
Clinical Research
D. Schlegel, C. Heron, A. Berg, J. Parascando, M. Silvis (2022).
Diagnoses per Encounter by Telephone, Televideo, and In-Office Visits. Journal of the American Board of Family Medicine, 35(3), 491-496.
Clinical Research
E.K. Batra, V.J. Palusci, A. Berg (2022).
Factors associated with child maltreatment fatality among children with an open Child Protective Services case at death. Child Abuse Review, 31(e2734), 1-14. DOI
Pediatric Oncology
D.R. Dolbow, G.J. Farkas, A. Berg, M.A. Welsch, A.S. Gorgey, D.R. Gater (2022).
Fat to lean mass ratio in spinal cord injury: Possible interplay of components of body composition that may instigate systemic inflammation and metabolic syndrome. The Journal of Spinal Cord Medicine, 45(6), 833-839. DOI
Clinical ResearchSpinal Cord Injury
S.S. Dinavahi, Y. Chen, R. Gowda, P.K. Dhanyamraju, K. Punnath, D. Desai, A. Berg, S.R. Kimball, et al. (2022).
Targeting Protein Translation in Melanoma by Inhibiting EEF-2 Kinase Regulates Cholesterol Metabolism though SREBP2 to Inhibit Tumor Development. International Journal of Molecular Sciences, 23, 3481(1-19). DOI
Adult Oncology
S.S. Dinavahi, Y. Chen, K. Punnath, A. Berg, M. Herlyn, M. Foroutan, N.D. Huntington, G.P. Robertson (2022).
Targeting WEE1/AKT restores p53-dependent NK cell activation to induce immune checkpoint blockade responses in ‘cold’ melanoma. Cancer Immunology Research, 10(6), 757-769. DOI
Adult Oncology

2021

Journal Articles

J. Liao, A. Berg, T.L. McMurry (2021).
A Robustified Posterior for Bayesian Inference on a Large Number of Parallel Effects. The American Statistician, 75(2), 145-151. PDF DOI
BayesianMethodology
Y. Chen, S.S. Dinavahi, Q. Feng, R. Gowda, S. Ramisetti, X. Xia, K.B. LaPenna, V.R. Chirasani, et al. (2021).
Activating Sphingosine-1-phospahte signaling in endothelial cells increases myosin light chain phosphorylation to decrease endothelial permeability thereby inhibiting cancer metastasis. Cancer Letters, 506, 107–119. DOI
Adult Oncology
N. Hawila, A. Berg (2021).
Assessing the impact of COVID-19 on registered interventional clinical trials. Clinical and Translational Science, 14(3), 1147-1154. PDF DOI
Clinical ResearchClinical TrialsMethodology
A. Berg (2021).
Bayesian explorations with dice. Teaching Statistics, 43, 114–123. PDF
BayesianMethodologyStatistics Education
A. Berg (2021).
Bayesian Modeling Competitions for the Classroom. Colombian Journal of Statistics, 44(2), 243-252. PDF DOI
BayesianMethodologyStatistics Education
D.R. Gater Jr, G.J. Farkas, D.R. Dolbow, A. Berg, A.S. Gorgey (2021).
Body Composition and Metabolic Assessment After Motor Complete Spinal Cord Injury: Development of a Clinically Relevant Equation to Estimate Body Fat. Topics in Spinal Cord Injury Rehabilitation, 27(1), 11–22. DOI
Spinal Cord Injury
B.P. Kline, T. Weaver, D.L. Brinton Jr, L. Harris, G.S. Yochum, A. Berg, W.A. Koltun (2021).
Clinical and Genetic Factors Impact Time to Surgical Recurrence After Ileocolectomy for Crohn’s Disease. Annals of Surgery, 274(2), 346–351. DOI
Clinical Research
B.P. Kline, G.S. Yochum, D.L. Brinton, K.M. Schieffer, T. Weaver, L. Harris, S. Deiling, A. Berg, et al. (2021).
COLQ and ARHGAP15 are associated with diverticular disease and are expressed in the colon. Journal of Surgical Research, 267, 397–403. DOI
Clinical ResearchStatistical Genetics
G.J. Farkas, P.S. Gordon, N. Trewick, A.S. Gorgey, D.R. Dolbow, E. Tiozzo, A. Berg, D.R.G. Jr (2021).
Comparison of Various Indices in Identifying Insulin Resistance and Diabetes in Chronic Spinal Cord Injury. Journal of Clinical Medicine, 10(23), 5591: 1-16. DOI
Clinical ResearchSpinal Cord Injury
J. Liao, V. Midya, A. Berg (2021).
Connecting and contrasting the Bayes factor and a modified ROPE procedure for testing interval null hypotheses. The American Statistician, 75(3), 256-264. PDF DOI
BayesianMethodology
A. O’Donovan, S.M. Oser, J. Parascando, A. Berg, D.E. Nease Jr, T.K. Oser (2021).
Determining the Perception and Willingness of Primary Care Providers to Prescribe Advanced Diabetes Technologies. Journal of Patient-Centered Research and Reviews, 8(3), 272–276. DOI
Clinical Research
U. Golla, M.A. Ehudin, C. Annageldiyev, Z. Zeng, D.B. Tukaramrao, A. Tarren, A.A. Date, I. Elcheva, et al. (2021).
DJ4 Targets the Rho-Associated Protein Kinase Pathway and Attenuates Disease Progression in Preclinical Murine Models of Acute Myeloid Leukemia. Cancers, 13(19), 4889. DOI
Adult Oncology
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater Jr (2021).
Energy Expenditure, Cardiorespiratory Fitness, and Body Composition Following Arm Cycling or Functional Electrical Stimulation Exercises in Spinal Cord Injury: A 16-Week Randomized Controlled Trial. Topics in Spinal Cord Injury Rehabilitation, 27(1), 121–134. DOI
Spinal Cord Injury
J. Radico, T.K. Oser, T.B. Fausnight, A. Berg, A. Ouyang, S.L. Leong (2021).
Factors that Influence Work Family Conflict for Women Faculty. MedEdPublish, 10(63), 1-13. DOI
Clinical Research
B. Gerace, J. Parascando, A. Berg, T. Oser, J. Radico (2021).
Food Security among Physician Residents. TBD.
Clinical Research
S. Veldheer, C. Scartozzi, C. Bordner, C. Opara, B. Williams, L. Weaver, D. Rodriguez, A. Berg, et al. (2021).
Impact of a prescription produce program on diabetes and cardiovascular risk outcomes. Journal of Nutrition Education and Behavior, 53(12), 1008-1017. DOI
Clinical Research
T.D. Riley, E. Messner, J.A. Parascando, C. LaGamma, A. Berg, J.R. Tucker, C.W. Bone (2021).
Impact of the COVID-19 shutdown on work-home conflict and burnout in a large department of family medicine: Disproportionate toll on women. TBD.
Clinical Research
G. Raca, H. Abdel-Azim, F. Yue, J. Broach, J.L. Payne, M.E. Reeves, C. Gowda, J. Schramm, et al. (2021).
Increased Incidence of IKZF1 deletions and IGH-CRLF2 translocations in B-ALL of Hispanic/Latino children–-a novel health disparity. Leukemia, 35, 2399-2402. DOI
Clinical ResearchPediatric Oncology
A. Berg, N. Hawila (2021).
Introducing Bayesian inference with the taxicab problem. Proceedings of the 10th Australian Conference on Teaching Statistics, 55-60. PDF
BayesianMethodologyStatistics Education
D. McGuire, Y. Jiang, M. Liu, J.D. Weissenkampen, S. Eckert, L. Yang, F. Chen, A. Berg, et al. (2021).
Model-based assessment of replicability for genome-wide association meta-analysis. Nature Communications, 12(1964), 1–14. DOI
Statistical Genetics
R. Liu, C. Onks, J. Petscavage-Thomas, E. Walker, A. Berg, M. Silvis, A. Dhawan (2021).
Prevalence of shoulder labral abnormalities on MRI in a non-athletic asymptomatic young adult population. Skeletal Radiology, 50(5), 921-925. DOI
Clinical Research
M. Polly, A. Berg, H. Dong, R. Lennon (2021).
Retrospective comparison of Brazilian Ribeirinho health between black-water (Rio Negro), white-water (Madeira River), and mixed-type (Purus River) communities. TBD.
Clinical Research
M. Partin, A. Sanchez, J. Poulson, A. Berg, J. Parascando, S.I. Ramirez (2021).
Social inequities between prenatal patients in family medicine and obstetrics and gynecology with similar outcomes. The Journal of the American Board of Family Medicine, 34(1), 181–188. DOI
Clinical Research
A. Berg, N. Hawila (2021).
Some Teaching Resources Using R with Illustrative Examples Exploring COVID-19 Data. Teaching Statistics, 43, S98-S109.
Clinical ResearchMethodologyStatistics Education
A. Berg (2021).
Statistical analysis of the International Mathematical Olympiad. The Mathematical Intelligencer, 43(1), 105-112. PDF DOI
MethodologyStatistics Education
J. Loeffert, C. Onks, S. Phillips, A. Berg, D. Rodgers (2021).
Wilderness Medicine Boot Camp for Primary Care Sports Medicine Fellows Goes Virtual: From Uncertain Times Comes a Novel Approach to Traditional In- person Teaching. Interdisciplinary Journal of Virtual Learning in Medical Sciences, 12(2), 2-7. DOI
Clinical ResearchMethodologyStatistics Education

2020

Journal Articles

R. Block, A. Berg, R.P. Lennon, E.L. Miller, M. Nunez-Smith (2020).
African American adherence to COVID-19 public health recommendations. HLRP: Health Literacy Research and Practice, 4(3), e166–e170. DOI
Clinical Research
A. Berg (2020).
Assessing the impact of the NIH CTSA program on clinical trials registered with clinicaltrials.gov.. Clinical and Translational Science, 13, 818-825. PDF DOI
Clinical TrialsMethodology
A. Berg (2020).
Bayesian statistics in the classroom: Introducing shrinkage with basketball statistics and the internet movie database. Teaching Statistics, 42(2), 47-53. PDF DOI
BayesianMethodologyStatistics Education
B.P. Kline, T. Weaver, D.L. Brinton Jr, S. Deiling, G.S. Yochum, A. Berg, W.A. Koltun (2020).
Clinical and Genetic Factors Associated With Complications After Crohn’s Ileocolectomy. Diseases of the Colon & Rectum, 63(3), 357-364. DOI
Clinical Research
S.S. Dinavahi, R. Gowda, K. Gowda, C.G. Bazewicz, V.R. Chirasani, M.B. Battu, A. Berg, N.V. Dokholyan, et al. (2020).
Development of a Novel Multi-Isoform ALDH Inhibitor Effective as an Antimelanoma Agent. Molecular Cancer Therapeutics, 19(2), 447–459. DOI
Adult Oncology
O.F. Noel, A. Berg, N. Onyango, D.R. Mackay (2020).
Ethnic and Gender Diversity Comparison between Surgical Patients and Caring Surgeons. Plastic and Reconstructive Surgery Global Open, 8(10), 1–7. DOI
Clinical Research
N. Hawila, A. Berg (2020).
Exploring and Analyzing COVID-19 Datasets Using R. Teaching Statistics.
Clinical ResearchMethodologyStatistics Education
T. Riley, W. Curry, M. Beck, A. Berg, M. Ruffin (2020).
Feasibility of Nonanonymous Burnout Surveys in a Large Academic Department. Family Medicine, 52(4), 278–281. DOI
Clinical Research
G.J. Farkas, P.S. Gordon, A.M. Swartz, A. Berg, D.R. Gater (2020).
Influence of mid and low paraplegia on cardiorespiratory fitness and energy expenditure. Spinal Cord Series and Cases, 6(1), 1–10. DOI
Spinal Cord Injury
A. Berg, D. Politis, K. Suaray, H. Zeng (2020).
Reduced bias nonparametric lifetime density and hazard estimation. TEST, 29, 704-727. PDF DOI
MethodologyNonparametric
A. Berg (2020).
Statistical analysis of the Elo rating system in chess. Chance, 33(3), 31-38. PDF DOI
MethodologyStatistics Education

2019

Journal Articles

F. He, A. Berg, Y.I. Kawasawa, E.O. Bixler, J. Fernandez-Mendoz, E.A. Whitsel, D. Liao (2019).
Association between DNA methylation in obesity-related genes and body mass index percentile in adolescents. Scientific Reports, 9(2079), 1-8. PDF DOI
Clinical ResearchStatistical Genetics
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2019).
Caloric Intake Relative to Total Daily Energy Expenditure Using a Spinal Cord Injury–Specific Correction Factor: An Analysis by Level of Injury. American Journal of Physical Medicine & Rehabilitation, 98(11), 947–952. DOI
Spinal Cord Injury
G.J. Farkas, M.A. Pitot, A. Berg, D.R. Gater (2019).
Correction: Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis. Spinal cord, 57(3), 256–256. DOI
Clinical ResearchSpinal Cord Injury
S.M. Oser, H.L. Stuckey, J.A. Parascando, E.L. McGinley, A. Berg, T.K. Oser (2019).
Glycated hemoglobin differences among blog-reading adults with type 1 diabetes compared with those who do not read blogs: cross-sectional study. JMIR diabetes, 4(2), e13634. DOI
Clinical Research
G.J. Farkas, M.A. Pitot, A. Berg, D.R. Gater (2019).
Nutritional status in chronic spinal cord injury: a systematic review and meta-analysis. Spinal Cord, 57(1), 3–17. DOI
Clinical ResearchSpinal Cord Injury
D.R. Gater Jr, G.J. Farkas, A. Berg, C. Castillo (2019).
Prevalence of metabolic syndrome in veterans with spinal cord injury. The Journal of Spinal Cord Medicine, 42(1), 86–93. DOI
Clinical ResearchSpinal Cord Injury
B. Kline, D. Brinton, W. Koltun, A. Berg (2019).
rs4662344 Allele Variant of the Rho GTPase Activating Protein 15 (ARHGAP15) Is Associated with Management of Diverticulitis. Journal of the American College of Surgeons, 229(4), S71–S72.
Clinical ResearchStatistical Genetics
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2019).
Sex dimorphism in the distribution of adipose tissue and its influence on proinflammatory adipokines and cardiometabolic profiles in motor complete spinal cord injury. The Journal of Spinal Cord Medicine, 42(4), 430–436. DOI
Clinical ResearchSpinal Cord Injury
J. Liao, A. Berg (2019).
Sharpening Jensen’s inequality. The American Statistician, 73(3), 278-281. PDF DOI
MethodologyNonparametric
S.M. Matthews, M.A. Eshelman, A. Berg, W.A. Koltun, G.S. Yochum (2019).
The Crohn’s disease associated SNP rs6651252 impacts MYC gene expression in human colonic epithelial cells. PLoS ONE, 14(2). DOI
Clinical ResearchStatistical Genetics
D. Brunke-Reese, P. Ssentongo, A.E. Ssentongo, B.E. Phillips, E.M. Pauli, A. Berg, S.L. Kelleher, D.I. Soybel (2019).
The Role of Genetic Variant rs13266634 in SLC30A8/ZnT8 in Postoperative Hyperglycemia After Major Abdominal Surgery. The Journal of Clinical Endocrinology & Metabolism, 104(9), 3877–3892. DOI
Clinical ResearchStatistical Genetics

2018

Journal Articles

F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, A.N. Vgontzas, D. Liao (2018).
Abstract P129: Association Between Blood Pressure and DNA Methylation in Blood Pressure-related Genes in Adolescents. Circulation, 137(suppl_1), AP129–AP129.
Statistical Genetics
S.S. Dinavahi, M.A. Noory, R. Gowda, J.J. Drabick, A. Berg, R.I. Neves, G.P. Robertson (2018).
Moving synergistically acting drug combinations to the clinic by comparing sequential versus simultaneous drug administrations. Molecular Pharmacology, 93(3), 190–196. DOI
Clinical Research
J.M. Yingst, S. Veldheer, S. Hrabovsky, E. Hammett, J. Nicholson, A. Berg, J. Foulds (2018).
Pilot randomized trial of an automated smoking cessation intervention via mobile phone text messages as an adjunct to varenicline in primary care. Journal of Health Communication, 23(4), 370–378. DOI
Clinical Research
J.P. Sheehan, I. Grills, V.L. Chiang, H. Dong, A. Berg, R.E. Warnick, D. Kondziolka, B. Kavanagh (2018).
Quality of life outcomes for brain metastasis patients treated with stereotactic radiosurgery: pre-procedural predictive factors from a prospective national registry. Journal of Neurosurgery, 131(6), 1848–1854.
Adult OncologyNeuroscience
P. Chen, K.K. Hallock, C.L. Mulvey, A. Berg, V.T. Cherian (2018).
The effect of elevated A1c on immediate postoperative complications: a prospective observational study. Clinical Diabetes, 36(2), 128–132. DOI
Clinical Research
G.J. Farkas, A.S. Gorgey, D.R. Dolbow, A. Berg, D.R. Gater (2018).
The influence of level of spinal cord injury on adipose tissue and its relationship to inflammatory adipokines and cardiometabolic profiles. The Journal of Spinal Cord Medicine, 41(4), 407–415. DOI
Clinical ResearchSpinal Cord Injury
S. Veldheer, S. Hrabovsky, J. Yingst, C. Sciamanna, A. Berg, J. Foulds (2018).
The use of self-directed relapse prevention booklets to assist in maintaining abstinence after a 6-week group smoking cessation treatment program: A randomized controlled trial. Health Education & Behavior, 45(2), 190–197. DOI
Clinical Research
E. Hammett, S. Veldheer, S. Hrabovsky, J. Yingst, A. Berg, E. Poole, D. Stauffer, J. Foulds (2018).
TXT2STAYQUIT: pilot randomized trial of brief automated smoking cessation texting intervention for inpatient smokers discharged from the hospital. Journal of Hospital Medicine, 13(7), 488-489. DOI
Clinical Research

Conference Proceedings

R. Weinheimer, J. Kent, A. Berg, F. Puleo (2018).
THE BRIDGE BETWEEN PRIMARY CARE AND THE COLORECTAL SPECIALIST IN THE TREATMENT OF FECAL INCONTINENCE AND CONSTIPATION.. DISEASES OF THE COLON & RECTUM, 61(5), E181–E182.
Adult Oncology

Other

S.M. Oser, T. Oser, E.L. Mcginley, A. Berg, H.L. Stuckey (2018).
Blog Use Is Associated with Lower Hemoglobin A1c in Adults with Type 1 Diabetes. American Diabetes Association.
Clinical Research
D. Plano, S. Ramisetti, S. Kim, M. Pandey, C. Aliaga, D.N. Karelia, A. Berg, C. Sanmartin, et al. (2018).
Selective chemopreventive efficacy of 1, 4-phenylenebis (methylene) seleno-aspirin (p-XS-Asp) towards lung cancer. American Association for Cancer Research.
Adult Oncology

2017

Journal Articles

F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, E.A. Whitsel, D. Liao (2017).
Abstract P135: Abdominal Obesity is Associated With DNA Methylation in Cardiovascular Health Related Genes Among Adolescents. Circulation, 135(suppl_1), AP135–AP135.
Clinical ResearchStatistical Genetics
F. He, A. Berg, E.O. Bixler, J. Fernandez-Mendoza, Y. Imamura Kawasawa, A.C. Salzberg, E.A. Whitsel, D. Liao (2017).
Abstract P136: Cardiometabolic Burden in Adolescents is Associated with DNA Methylation in Genes Related to Cardiovascular Disease Risk. Circulation, 135(suppl_1), AP136–AP136.
Clinical ResearchStatistical Genetics
K. Crowell, K. Julian, M. Katzman, A. Berg, A. Tinsley, E. Williams, W. Koltun, E. Messaris (2017).
Compliance with Clostridium difficile treatment guidelines: effect on patient outcomes. Epidemiology & Infection, 145(11), 2185–2192. DOI
Clinical Research
P.F. Wrafter, T.M. Connelly, J.S. Khan, B.C. Lucey, A. Berg, W. Koltun, W.P. Joyce (2017).
Diverticular disease is associated with benign intra-abdominal cystic disease. Expert Review of Gastroenterology & Hepatology, 11(5), 487–490. DOI
Clinical Research
T.M. Connelly, C.S. Choi, A. Berg, L. Harris III, J. Coble, W.A. Koltun (2017).
Diverticulitis and Crohn’s disease have distinct but overlapping tumor necrosis superfamily 15 haplotypes. Journal of Surgical Research, 214, 262–269. DOI
Adult OncologyClinical Research
G.J. Farkas, A.S. Gorgey, D. Dolbow, A.S. Berg, D.R. Gater (2017).
Gender Differences in Adiposity and its Relationship to Cardiometabolic Profiles and Proinflammatory Adipokines in Spinal Cord Injury. The FASEB Journal, 31(1_supplement), 586–11.
Clinical ResearchSpinal Cord Injury
R.E. Andrew, A. Lauria, F.J. Puleo, A. Berg, D.B. Stewart Sr (2017).
Inpatient infliximab is ineffective at preventing colectomy for steroid refractory extensive colitis. Journal of Surgical Research, 219, 18–24. DOI
Clinical Research

Conference Proceedings

G. Farkas, A. Gorgey, D. Dolbow, A. Berg, D. Gater (2017).
Adipose Tissue Differs and Correlates to Carbohydrate Metabolism and Proinflammatory Adipokines by Level of Spinal Cord Injury. International Journal of Exercise Science: Conference Proceedings, 9(5), 34.
Spinal Cord Injury

2016

Journal Articles

H.R.S. Tagaram, D. Desai, G. Li, D. Liu, C.B. Rountree, K. Gowda, A. Berg, S. Amin, et al. (2016).
A selenium containing inhibitor for the treatment of hepatocellular cancer. Pharmaceuticals, 9(18), 1–14. DOI
Adult Oncology
F. He, A. Berg, Y. Imamura Kawasawa, A.C. Salzberg, E.O. Bixler, A.N. Vgontzas, D. Liao (2016).
Abstract P305: Obesity is Associated with Differentiated Methylation in Glucose Tolerance-related Genes in Adolescents. Circulation, 133(suppl_1), AP305–AP305.
Clinical ResearchStatistical Genetics
F. He, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, A. Berg, Y. Imamura Kawasawa, D. Liao (2016).
Abstract P312: lack of association between habitual sleep duration and obesity measures in adolescents with adequate sleep. Circulation, 133(suppl_1), AP312–AP312.
Clinical Research
J. Liao, D. Liao, A. Berg (2016).
Calibrated Bayes factors in assessing genetic association models. The American Statistician, 70(3), 250-256. PDF DOI
BayesianMethodology
C.S. Choi, A. Berg, W. Sangster, K.M. Schieffer, L.R. Harris III, S.M. Deiling, W.A. Koltun (2016).
Combined medical and surgical approach improves healing of septic perianal Crohn’s disease. Journal of the American College of Surgeons, 223(3), 506–514. DOI
Clinical Research
S. Ravi, R.J. Schilder, A. Berg, S.R. Kimball (2016).
Effects of age and hindlimb immobilization and remobilization on fast troponin T precursor mRNA alternative splicing in rat gastrocnemius muscle. Applied Physiology, Nutrition, and Metabolism, 41(2), 142–149. DOI
Clinical Research
T. Connelly, B. Sanders, A. Berg, V. Williams, L. Harris, others (2016).
Genetic and Demographic Correlates of Quality of Life after Ileal Pouch Anal Anastomosis for Ulcerative Colitis. J Inflam Bowel Dis & Disord, 1(107), 2.
Clinical Research
C. Choi, A. Berg, W. Sangster, others (2016).
Get credit right away by taking all CME tests online. J Am Coll Surg, 223, 506e514.
Clinical Research
D.M. Karamchandani, H.L. Lehman, S.E. Ohanessian, J. Mass'e, P.A. Welsh, R.D. Odze, J.R. Goldblum, A. Berg, et al. (2016).
Increasing diagnostic accuracy to grade dysplasia in Barrett’s esophagus using an immunohistochemical panel for CDX2, p120ctn, c-Myc and Jagged1. Diagnostic Pathology, 11(23), 1–13. DOI
Clinical Research
W. Sangster, A. Berg, C.S. Choi, T.M. Connelly, C.H. Chesnut III, W.A. Koltun, D.B. Stewart Sr (2016).
Outcomes of early ileocolectomy after percutaneous drainage for perforated ileocolic Crohn’s disease. The American Journal of Surgery, 212(4), 728–734. DOI
Clinical Research
C. Choi, J. Coble, L. Schneper, A. Berg, L. Harris, J. Hegarty, S. Deiling, J. Broach, et al. (2016).
P-182 Examination of Crohn’s Disease Variants in a Fraternal Twin Family Using Exome Sequencing and Inflammatory Bowel Disease-Associated Single Nucleotide Polymorphisms.. Inflammatory Bowel Diseases, 22, S64–S65.
Clinical ResearchStatistical Genetics
C.S. Choi, A.L. Stokes, B. Kline, J.S. Chen, A. Berg, L.R. Harris, S. Deiling, W.A. Koltun (2016).
Searching for the Genetic Determinants Affecting Diverticulitis Disease Phenotype. Journal of the American College of Surgeons, 223(4), S36.
Clinical Research
J.J. Pu, E.L. Miller, C. Davis, A.S. Berg, M. Comito, R.J. Greiner, W.C. Ehmann, D.F. Claxton, et al. (2016).
Unrelated Donor Umbilical Cord Blood Transplantation with and without Total Body Irradiation: A Single-Center Experience. Biology of Blood and Marrow Transplantation, 22(3), S374–S375.
Pediatric Oncology

Conference Proceedings

C. Choi, J. Chen, T. Chan, A. Berg, D. Stewart, W. Koltun (2016).
MULTIFOCAL DIVERTICULITIS: A GENETICALLY BASED DISEASE REQUIRING EXTENDED SURGICAL RESECTION.. DISEASES OF THE COLON & RECTUM, 59(5), E165–E165.
Clinical Research
A. Berg, F. He, E. Bixler, J. Fernandez-Mendoza, Y. Imamura, D. Liu, D. Liao (2016).
Sleep disordered breathing is associated with DNA methylation of obesity-related genes in adolescents. JOURNAL OF SLEEP RESEARCH, 25, 29–30.
Clinical ResearchStatistical Genetics

2015

Journal Articles

F. He, S. Rodriguez-Colon, J. Fernandez-Mendoza, A.N. Vgontzas, E.O. Bixler, A. Berg, Y.I. Kawasawa, M.D. Sawyer, et al. (2015).
Abdominal obesity and metabolic syndrome burden in adolescents, A Penn State Children Cohort study. Journal of Clinical Densitometry, 18(1), 30–36. DOI
Clinical ResearchPediatric Oncology
N.S. Yee, A.A. Kazi, Q. Li, Z. Yang, A. Berg, R.K. Yee (2015).
Aberrant over-expression of TRPM7 ion channels in pancreatic cancer: required for cancer cell invasion and implicated in tumor growth and metastasis. Biology Open, 4(4), 507–514. DOI
Adult OncologyStatistical Genetics
F. He, E.O. Bixler, J. Liao, A. Berg, Y. Imamura Kawasawa, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Abstract MP70: Habitual Sleep Variability, Mediated by Energy Intake, is Associated with Abdominal Obesity in Adolescents. Circulation, 131(suppl_1), AMP70–AMP70.
Clinical Research
S.M. Rodr'iguez-Col'on, A. Berg, Y. Imamura Kawasawa, A. Salzberg, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Abstract MP91: Abdominal Obesity, Independent of General Obesity, is Associated With Reduced Circadian Pattern of Cardiac Autonomic Modulation in Adolescents. Circulation, 131(suppl_1), AMP91–AMP91.
Clinical Research
A. Berg, Y.I. Kawasawa, A. Salzberg, E.O. Bixler, F. He, D. Liao (2015).
Abstract P260: obesity is associated with DNA methylation in population-based adolescents. Circulation, 131(suppl_1), AP260–AP260.
Clinical ResearchStatistical Genetics
W.H. Goodson III, L. Lowe, D.O. Carpenter, M. Gilbertson, A. Manaf Ali, A. Lopez de Cerain Salsamendi, A. Lasfar, A. Carnero, et al. (2015).
Assessing the carcinogenic potential of low-dose exposures to chemical mixtures in the environment: the challenge ahead. Carcinogenesis, 36(Suppl 1), S254–S296. DOI
Clinical Research
M. Dennis, C. Coleman, A. Berg, S. Kimball, others (2015).
Erratum: REDD1 enhances protein phosphatase 2A-mediated dephosphorylation of Akt to repress mTORC1 signaling (Science Signaling 7: 335 (ra68)). Science Signaling, 8(368), er4.
Adult Oncology
R.T. Wilson, J.D. Bortner Jr, A. Roff, A. Das, E.J. Battaglioli, J.P. Richie Jr, J. Barnholtz-Sloan, V.M. Chinchilli, et al. (2015).
Genetic and environmental influences on plasma vitamin D binding protein concentrations. Translational Research, 165(6), 667–676. DOI
Clinical Research
T.M. Connelly, A. Berg, L. Harris III, D. Brinton, S. Deiling, W.A. Koltun (2015).
Genetic determinants associated with early age of diagnosis of IBD. Diseases of the Colon & Rectum, 58(3), 321–327. DOI
Clinical Research
F. He, E.O. Bixler, J. Liao, A. Berg, Y.I. Kawasawa, J. Fernandez-Mendoza, A.N. Vgontzas, D. Liao (2015).
Habitual sleep variability, mediated by nutrition intake, is associated with abdominal obesity in adolescents. Sleep Medicine, 16(12), 1489–1494. DOI
Clinical Research
F. He, E.O. Bixler, A. Berg, Y.I. Kawasawa, A.N. Vgontzas, J. Fernandez-Mendoza, J. Yanosky, D. Liao (2015).
Habitual sleep variability, not sleep duration, is associated with caloric intake in adolescents. Sleep Medicine, 16(7), 856–861. DOI
Clinical Research
J. Coble, R.J. Schilder, A. Berg, M.J. Drummond, B.B. Rasmussen, S.R. Kimball (2015).
Influence of ageing and essential amino acids on quantitative patterns of troponin T alternative splicing in human skeletal muscle. Applied Physiology, Nutrition, and Metabolism, 40(8), 788–796. DOI
Clinical Research
D.M. Tacelosky, D.N. Alexander, M. Morse, A. Hajnal, A. Berg, R. Levenson, P.S. Grigson (2015).
Low expression of D2R and Wntless correlates with high motivation for heroin.. Behavioral Neuroscience, 129(6), 744. DOI
Statistical Genetics
R.B. Robey, J. Weisz, N.B. Kuemmerle, A.C. Salzberg, A. Berg, D.G. Brown, L. Kubik, R. Palorini, et al. (2015).
Metabolic reprogramming and dysregulated metabolism: cause, consequence and/or enabler of environmental carcinogenesis?. Carcinogenesis, 36(Suppl 1), S203–S231. DOI
Clinical Research
J.L. Modesto, A. Hull, A.Y. Angstadt, A. Berg, C.J. Gallagher, P. Lazarus, J.E. Muscat (2015).
NNK reduction pathway gene polymorphisms and risk of lung cancer. Molecular Carcinogenesis, 54(S1), E94–E102. DOI
Adult OncologyStatistical Genetics
W. Sangster, E. Messaris, A. Berg, D.B. Stewart Sr (2015).
Single-site laparoscopic colorectal surgery provides similar clinical outcomes compared to standard laparoscopic surgery: an analysis of 626 patients. Diseases of the Colon and Rectum, 58(9), 862. DOI
Adult OncologyClinical Research
T.M. Connelly, A. Berg, L.R. Harris, R. Tappouni, D. Brinton, S. Deiling, W.A. Koltun (2015).
Surgical diverticulitis is not associated with defects in the expression of wound healing genes. International Journal of Colorectal Disease, 30(9), 1247–1254. DOI
Clinical ResearchStatistical Genetics
J. Foulds, S. Veldheer, S. Hrabovsky, J. Yingst, C. Sciamanna, G. Chen, J.Z. Maccani, A. Berg (2015).
The effect of motivational lung age feedback on short-term quit rates in smokers seeking intensive group treatment: a randomized controlled pilot study. Drug and Alcohol Dependence, 153, 271–277. DOI
Clinical Research

Conference Proceedings

T. Connelly, C. Choi, A. Berg, J. Coble, W. Koltun (2015).
DIVERTICULITIS AND CROHN’S DISEASE HAVE DISTINCT BUT OVERLAPPING TUMOR NECROSIS SUPERFAMILY 15 (TNESF15) HAPLOTYPES. DISEASES OF THE COLON & RECTUM, 58(5), E95–E96.
Adult OncologyClinical Research

Other

J.J. Pu, E.L. Miller, C. Davis, A.S. Berg, M. Comito, R. Greiner, W.C. Ehmann, D. Claxton, et al. (2015).
Unrelated donor umbilical cord blood transplantation with and without total body irradiation: A single-center experience.. American Society of Clinical Oncology.
Pediatric Oncology

2014

Journal Articles

N.S. Yee, Q. Li, A.A. Kazi, Z. Yang, A. Berg, R.K. Yee (2014).
Aberrantly over-expressed TRPM8 channels in pancreatic adenocarcinoma: Correlation with tumor size/stage and requirement for cancer cells invasion. Cells, 3(2), 500–516. DOI
Adult Oncology
T.M. Connelly, W.A. Koltun, W. Sangster, A. Berg, J.P. Hegarty, L. Harris III, S. Deiling, D.B. Stewart (2014).
An interleukin-4 polymorphism is associated with susceptibility to Clostridium difficile infection in patients with inflammatory bowel disease: results of a retrospective cohort study. Surgery, 156(4), 769–775.
Clinical Research
J.P. Richie, A. Das, A.M. Calcagnotto, R. Sinha, W. Neidig, J. Liao, E.J. Lengerich, A. Berg, et al. (2014).
Comparative effects of two different forms of selenium on oxidative stress biomarkers in healthy men: a randomized clinical trial. Cancer Prevention Research, 7(8), 796–804. DOI
Clinical TrialsMethodology
T. Connelly-conception, A. Berg, L.H. III-concept, J. Hegarty, S. Deiling, D. Brinton, D. Stewart, W. Koltun-conception (2014).
Corresponding Author and Request for Reprints.
Clinical Research
S. Grigoryev, A. Salzberg, A. Berg, A. Harris-Becker, T. Loughran, D. Claxton (2014).
Genome-wide mapping of large organized heterochromatin domains reveals hotspots of epigenetic and transcriptional changes associated with myeloid differentiation and acute myeloid leukemia (565.1). The FASEB Journal, 28(1_supplement), 565–1.
Adult OncologyStatistical Genetics
J.S. Pogacnik, E. Messaris, S.M. Deiling, T.M. Connelly, A. Berg, D.B. Stewart, K.J. McKenna, L.S. Poritz, et al. (2014).
Increased risk of incisional hernia after sigmoid colectomy for diverticulitis compared with colon cancer. Journal of the American College of Surgeons, 218(5), 920–928. DOI
Adult OncologyClinical Research
H. Lehman, P. Welsh, J. Mass'e, A. Salzberg, A. Berg, D. Stairs (2014).
Investigating the mechanisms of esophageal squamous cell carcinoma invasion (59.9). The FASEB Journal, 28(1_supplement), 59–9.
Adult Oncology
E. Popova, C. Pinzon-Guzman, A. Salzberg, A. Berg, S.S. Zhang, C.J. Barnstable (2014).
Lysine demethylase 1 is required for mouse rod photoreceptor development.. Investigative Ophthalmology & Visual Science, 55(13), 4998–4998.
Clinical Research
T. Connelly, A. Berg, J. Hegarty, S. Deiling, D. Stewart, W. Koltun (2014).
Neoplasia in Ulcerative Colitis Patients Is Not Associated With Previously Identified Inflammatory Bowel Disease Single Nucleotide Polymorphisms. Journal of Surgical Research, 186(2), 499. DOI
Clinical Research
S. Veldheer, J. Yingst, G. Foulds, S. Hrabovsky, A. Berg, C. Sciamanna, J. Foulds (2014).
Once bitten, twice shy: concern about gaining weight after smoking cessation and its association with seeking treatment. International Journal of Clinical Practice, 68(3), 388–395. DOI
Clinical Research
W. Amin, F. Tsui, C. Borromeo, C.H. Chuang, J.U. Espino, D. Ford, W. Hwang, W. Kapoor, et al. (2014).
PaTH: towards a learning health system in the Mid-Atlantic region. Journal of the American Medical Informatics Association, 21(4), 633–636. DOI
Clinical Research
N. Yee, Q. Li, A. Kazi, Z. Yang, A. Berg, S. Kimball, R. Yee (2014).
Pennsylvania State University. Hershey, PA, USA.
Clinical Research
J. Liao, T. McMurry, A. Berg (2014).
Prior robust empirical Bayes inference for large-scale data by conditioning on rank with application to microarray data. Biostatistics, 15(1), 60-73. PDF DOI
BayesianMethodologyStatistical Genetics
M.D. Dennis, C.S. Coleman, A. Berg, L.S. Jefferson, S.R. Kimball (2014).
REDD1 enhances protein phosphatase 2A–mediated dephosphorylation of Akt to repress mTORC1 signaling. Science Signaling, 7(335), ra68–ra68. DOI
Adult Oncology
V. Sathyendra, H.J. Donahue, K.E. Vrana, A. Berg, D. Fryzel, J. Gandhi, J.S. Reid (2014).
Single nucleotide polymorphisms in osteogenic genes in atrophic delayed fracture-healing: a preliminary investigation. Journal of Bone & Joint Surgery, 96(15), 1242–1248. DOI
Clinical Research
D.B. Stewart, A. Berg, J.P. Hegarty (2014).
Single nucleotide polymorphisms of the tcdC gene and presence of the binary toxin gene predict recurrent episodes of Clostridium difficile infection. Annals of Surgery, 260(2), 299–304. DOI
Statistical Genetics
D.B. Stewart, A. Berg, E. Messaris (2014).
Single-site laparoscopic colorectal surgery provides similar lengths of hospital stay and similar costs compared with standard laparoscopy: results of a retrospective cohort study. Journal of Gastrointestinal Surgery, 18(4), 774–781. DOI
Adult OncologyClinical Research
C. Mitchell, J. Hobcraft, S.S. McLanahan, S.R. Siegel, A. Berg, J. Brooks-Gunn, I. Garfinkel, D. Notterman (2014).
Social disadvantage, genetic sensitivity, and children’s telomere length. Proceedings of the National Academy of Sciences, 111(16), 5944–5949. DOI
Pediatric Oncology
T.M. Connelly, A. Berg, L.R. Harris III, J.P. Hegarty, F.M. Ruggiero, S.M. Deiling, D.L. Brinton, W.A. Koltun (2014).
T-cell activation Rho GTPase–activating protein expression varies with inflammation location and severity in Crohn’s disease. Journal of Surgical Research, 190(2), 457–464. DOI
Clinical ResearchStatistical Genetics
S. Rodr'iguez-Col'on, F. He, E.O. Bixler, J. Fernandez-Mendoza, A.N. Vgontzas, A. Berg, Y.I. Kawasawa, D. Liao (2014).
The circadian pattern of cardiac autonomic modulation and obesity in adolescents. Clinical Autonomic Research, 24(6), 265–273. DOI
Clinical Research
T. Connelly, A. Berg, E. Messaris, L. Poritz, S. Deiling, W. Koltun (2014).
The evolving role of surveillance colonoscopy and anti-TNF usage after ileocolectomy in Crohn’s Disease (CD) patients: F31. Colorectal Disease, 16.
Clinical Research
T. Connelly, A. Berg, L. Harris, J. Hegarty, S. Deiling, D. Stewart, W. Koltun (2014).
The Expression of Colonic TAGAP is Affected By Severity of Crohn’s Disease Inflammation and The Rs212388 Allele. Journal of Surgical Research, 186(2), 499. DOI
Clinical ResearchStatistical Genetics
L. Zhang, X. Ren, Y. Cheng, X. Liu, J.E. Allen, Y. Zhang, Y. Yuan, S. Huang, et al. (2014).
The NFB inhibitor, SN50, induces differentiation of glioma stem cells and suppresses their oncogenic phenotype. Cancer Biology & Therapy, 15(5), 602–611. DOI
Pediatric Oncology
T.M. Connelly, A. Berg, J.P. Hegarty, S. Deiling, D. Brinton, L.S. Poritz, W.A. Koltun (2014).
The TNFSF15 gene single nucleotide polymorphism rs7848647 is associated with surgical diverticulitis. Annals of Surgery, 259(6), 1132–1137. DOI
Clinical ResearchStatistical Genetics
T.M. Connelly, A.S. Berg, L.R. Harris, S. Deiling, D. Brinton, W.A. Koltun (2014).
TNFSF15 mRNA Expression Is Upregulated in Sigmoid Tissue of Diverticulitis Patients. Journal of the American College of Surgeons, 219(3), S20–S21. DOI
Clinical ResearchStatistical Genetics
T.M. Connelly, A. Berg, L.R. Harris III, D.L. Brinton, J.P. Hegarty, S.M. Deiling, D.B. Stewart, W.A. Koltun (2014).
Ulcerative colitis neoplasia is not associated with common inflammatory bowel disease single-nucleotide polymorphisms. Surgery, 156(2), 253–262. DOI
Clinical Research

Conference Proceedings

T. Connelly, A. Berg, L. Harris, D. Brinton, S. Deiling, W. Koltun (2014).
GENETIC DETERMINANTS ASSOCIATED WITH EARLY AGE OF DIAGNOSIS OF INFLAMMATORY BOWEL DISEASE.. DISEASES OF THE COLON & RECTUM, 57(5), E86–E86.
Clinical Research
T. Connelly, A. Berg, L. Harris, D. Brinton, S. Deiling, W. Koltun (2014).
SURGICAL DIVERTICULITIS IS NOT ASSOCIATED WITH DEFECTS IN EXPRESSION OF WOUND HEALING GENES. DISEASES OF THE COLON & RECTUM, 57(5), E266–E266.
Clinical ResearchStatistical Genetics
T. Connelly, A. Berg, L. Harris III, D. Brinton, S. Deiling, W. Koltun (2014).
The Role of the TNFSF15 Gene in Surgical Diverticulitis. IRISH JOURNAL OF MEDICAL SCIENCE, 183, S249–S249.
Clinical ResearchStatistical Genetics

Other

M.G. Kaag, J.P. Richie, A. Das, A. Calcagnotto, R. Sinha, W. Neidig, J. Liao, E.J. Lengreich, et al. (2014).
Supplementation with selenium-enriched yeast but not selenomethionine reduces oxidative stress in healthy men in a randomized clinical trial. American Association for Cancer Research.
Clinical TrialsMethodology
J.J. Pu, E.L. Miller, A. Berg, M. Comito, R.J. Greiner, W.C. Ehmann, D.F. Claxton, W.B. Rybika (2014).
Utilization of Total Body Irradiation Is Not Necessary for Unrelated Donor Umbilical Cord Blood Transplants: a Single-Center Experience. American Society of Hematology Washington, DC.
Pediatric Oncology

2013

Journal Articles

T.M. Connelly, W.A. Koltun, A. Berg, J.P. Hegarty, D. Brinton, S. Deiling, L.S. Poritz, D.B. Stewart (2013).
A single nucleotide polymorphism in the STAT5 gene favors colonic as opposed to small-bowel inflammation in Crohn’s disease. Diseases of the Colon & Rectum, 56(9), 1068–1074. DOI
Clinical ResearchStatistical Genetics
G. Liu, G. Chen, L. Sinoway, A. Berg (2013).
Assessing the impact of the NIH CTSA program on institutionally sponsored clinical trials. Clinical and Translational Science, 6(3), 196-200. PDF DOI
Clinical TrialsMethodology
J.H. Ashmore, S.M. Lesko, J.E. Muscat, C.J. Gallagher, A. Berg, P.E. Miller, T.J. Hartman, P. Lazarus (2013).
Association of dietary and supplemental folate intake and polymorphisms in three FOCM pathway genes with colorectal cancer in a population-based case-control study. Genes, Chromosomes and Cancer, 52(10), 945–953. DOI
Adult Oncology
L.S. Poritz, R. Sehgal, A. Berg, L. Laufenberg, C. Choi, E.D. Williams (2013).
Chronic Use of PPI and H\(_2\) Antagonists Decreases the Risk of Pouchitis After IPAA for Ulcerative Colitis. Journal of Gastrointestinal Surgery, 17(6), 1027–1031. DOI
Clinical Research
J. Foulds, C. Russ, C. Yu, K.H. Zou, A. Galaznik, M. Franzon, A. Berg, J.R. Hughes (2013).
Effect of varenicline on individual nicotine withdrawal symptoms: a combined analysis of eight randomized, placebo-controlled trials. Nicotine & Tobacco Research, 15(11), 1849–1857. DOI
Clinical Research
D.R. Masser, A. Berg, W.M. Freeman (2013).
Focused, high accuracy 5-methylcytosine quantitation with base resolution by benchtop next-generation sequencing. Epigenetics & Chromatin, 6(1), 33. DOI
Statistical Genetics
A. Sharma, S.V. Madhunapantula, R. Gowda, A. Berg, R.I. Neves, G.P. Robertson (2013).
Identification of Aurora Kinase B and Wee1-Like Protein Kinase as Downstream Targets of V600EB-RAF in Melanoma. The American Journal of Pathology, 182(4), 1151–1162. DOI
Adult Oncology
Y. Sun, J.B. Guttenplan, T. Cooper, J. Krzeminski, C. Aliaga, T. Boyiri, W. Kosinska, Z. Zhao, et al. (2013).
Mechanisms underlying the varied mammary carcinogenicity of the environmental pollutant 6-nitrochrysene and its metabolites (-)-[R,R]- and (+)-[S,S]-1, 2-dihydroxy-1, 2-dihydro-6-nitrochrysene in the rat. Chemical Research in Toxicology, 26(4), 547–554. DOI
Clinical Research
V.A. Canfield, A. Berg, S. Peckins, S.M. Wentzel, K.C. Ang, S. Oppenheimer, K.C. Cheng (2013).
Molecular phylogeography of a human autosomal skin color locus under natural selection. G3: Genes, Genomes, Genetics, 3(11), 2059–2067. DOI
Clinical Research
Z. Lin, J.P. Hegarty, G. John, A. Berg, Z. Wang, R. Sehgal, D.M. Pastor, Y. Wang, et al. (2013).
NOD2 mutations affect muramyl dipeptide stimulation of human B lymphocytes and interact with other IBD-associated genes. Digestive Diseases and Sciences, 58(9), 2599–2607. DOI
Clinical ResearchStatistical Genetics
T. Connelly, B. Sanders, A. Berg, L. Harris III, A. Tinsley, E. Williams, W. Koltun (2013).
O-019 YI Genetic Predictors of Quality of Life Post Ileal Anal Pouch Anastomosis for Ulcerative Colitis. Inflammatory Bowel Diseases, 19(suppl_1), S13–S14.
Clinical Research
D.B. Stewart, A. Berg, J. Hegarty (2013).
Predicting recurrence of C. difficile colitis using bacterial virulence factors: binary toxin is the key. Journal of Gastrointestinal Surgery, 17(1), 118–125. DOI
Clinical Research
E. Hammett, S. Veldheer, S.H. RD, J. Yingst, A. Berg, E. Poole, D. Stauffer (2013).
Related Articles from PubMed. BMJ, 347, f4004.
Clinical Research
A.Y. Angstadt, A. Berg, J. Zhu, P. Miller, T.J. Hartman, S.M. Lesko, J.E. Muscat, P. Lazarus, et al. (2013).
The effect of copy number variation in the phase II detoxification genes UGT2B17 and UGT2B28 on colorectal cancer risk. Cancer, 119(13), 2477–2485. DOI
Adult Oncology

Conference Proceedings

T.E. Spratt, A. Gowda, A. Salzberg, A. Berg, C. Song, S.S. Dovat (2013).
Binding of benzo [a] pyrene diol epoxide to the genome. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 246.
Statistical Genetics
T. Connelly, A. Berg, L. Harris, J. Hegarty, S. Deiling, W. Koltun (2013).
Mutation in TAGAP is Protective of Anal Sepsis in Crohn’s Disease. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S342–S342. DOI
Clinical Research
R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2013).
NOD2/CARD15 mutations correlate with severe pouchitis after Ileal pouch-anal anastomosis. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S37–S37.
Clinical Research
T. Connelly, A. Berg, J. Hegarty, S. Deiling, L. Harris, D. Brinton, L. Poritz, W. Koltun (2013).
POLYMORPHISM WITHIN THE TNFSF15 GENE IS ASSOCIATED WITH DIVERTICULITIS REQUIRING SURGICAL INTERVENTION: A CONFIRMATORY STUDY. DISEASES OF THE COLON & RECTUM, 56(4), E73–E74.
Clinical ResearchStatistical Genetics
R. Sehgal, A. Berg, R. Figueroa, L. Poritz, K. McKenna, D. Stewart, W. Koltun (2013).
Risk factors for surgical site infections after colorectal resection in diabetic patients. IRISH JOURNAL OF MEDICAL SCIENCE, 182, S74–S74.
Adult OncologyClinical Research
J. Salgado, S. Deiling, A. Berg, D. Stewart, E. Messaris, K. McKenna, L. Poritz, W. Koltun (2013).
RISK OF INCISIONAL HERNIA IS HIGHER AFTER COLECTOMY DONE FOR DIVERTICULITIS VERSUS CANCER.. DISEASES OF THE COLON & RECTUM, 56(4), E119–E119.
Clinical Research

Other

D. Liao, F. He, A. Berg, A.N. Vgontzas, J. Julio Fernandez-Mendoza, E.O. Bixler (2013).
Abstract P197: Sleep Variability and Cardiac Arrhythmia in Adolescents-Penn State Child Cohort (PSCC) Study. Lippincott Williams & Wilkins.
Clinical Research
J.H. Ashmore, A. Berg, C. Gallagher, P. Miller, J. Muscat, J. Zhu, T. Hartman, P. Lazarus, et al. (2013).
Association of dietary and supplemental folate intake and polymorphisms of the MTHFR, MTHFD1, and TYMS genes and colorectal cancer in a population-based study. Federation of American Societies for Experimental Biology.
Adult Oncology
J.J. Pu, G.R. Rivera, A. Sido, A. Berg, C. Boyer, M.G. Bayerl (2013).
Comparison Of Lymphocytic Immune Profiles Of Aplastic Anemia and Hypocellular Myelodysplastic Syndrome. American Society of Hematology Washington, DC.
Clinical Research
S. Zhang, K. Chen, J.R. Richie, A. Calcagnotto, C. Aliaga, A. Berg, Y. Sun, A.K. Sharma, et al. (2013).
Effect of alcohol on DB [a, l] P, an environmental pollutant and a tobacco smoke constituent, on DNA adduct formation in mouse oral tissues.. American Association for Cancer Research.
Clinical Research
K. Chen, S. Zhang, C. Aliaga, Y. Sun, A. Berg, A. Sharma, S. Amin, G. Stoner, et al. (2013).
Effects of black raspberry and related components on DB [a, l] P-induced DNA adduct formation in mouse oral tissues.. American Association for Cancer Research.
Clinical Research

2012

Journal Articles

L.S. Poritz, L.R. Harris, A. Berg, T.M. Connelly, J.P. Hegarty, S. Deiling, Z. Lin, R. Sehgal (2012).
531 Mutation in ZO-1 is Associated With Protection From Familial Inflammatory Bowel Disease. Gastroenterology, 142(5), S–1029.
Clinical Research
L.S. Poritz, A. Berg (2012).
532 Ostomy Creation Significantly Increases ER Visits and Hospital Readmission After Colorectal Resection. Gastroenterology, 142(5), S–1029.
Adult Oncology
G.A. Clawson, E. Kimchi, S.D. Patrick, P. Xin, R. Harouaka, S. Zheng, A. Berg, T. Schell, et al. (2012).
Circulating tumor cells in melanoma patients. PLoS ONE, 7(7). DOI
Adult Oncology
L. Hou, L. Wang, A. Berg, M. Qian, Y. Zhu, F. Li, M. Deng (2012).
Comparison and evaluation of network clustering algorithms applied to genetic interaction networks. Frontiers in Bioscience, 4, 2150–2161. DOI
Clinical Research
J. Foulds, S. Veldheer, A. Berg (2012).
Electronic cigarettes: a response to Leelavathi and Das. International Journal of Clinical Practice, 66(4), 417–418. DOI
Clinical Research
Z.R. Tsetskhladze, V.A. Canfield, K.C. Ang, S.M. Wentzel, K.P. Reid, A. Berg, S.L. Johnson, K. Kawakami, et al. (2012).
Functional assessment of human coding mutations affecting skin pigmentation using zebrafish. PLoS ONE, 7(10). DOI
Clinical Research
R. Sehgal, A. Berg, J.I. Polinski, J.P. Hegarty, Z. Lin, K.J. McKenna, D.B. Stewart, L.S. Poritz, et al. (2012).
Genetic risk profiling and gene signature modeling to predict risk of complications after IPAA. Diseases of the Colon & Rectum, 55(3), 239–248. DOI
Clinical ResearchStatistical Genetics
J. Kreiss, S.N. Lahiri, T. Rao, S. Rao, C. Rao (2012).
Handbook of statistics. S. Subba Rao T. Subba Rao & C. Rao (Eds.), 3–26.
Clinical Research
J. Weisz, D.A. Shearer, E. Murata, S.D. Patrick, B. Han, A. Berg, G.A. Clawson (2012).
Identification of mammary epithelial cells subject to chronic oxidative stress in mammary epithelium of young women and teenagers living in USA: implication for breast carcinogenesis. Cancer Biology & Therapy, 13(2), 101–113. DOI
Clinical Research
T.M. Connelly, R. Sehgal, A. Berg, J.P. Hegarty, S. Deiling, D.B. Stewart, L.S. Poritz, W.A. Koltun (2012).
Mutation in TAGAP is protective of anal sepsis in ileocolic Crohn’s disease. Diseases of the Colon & Rectum, 55(11), 1145–1152. DOI
Clinical Research
R. Sehgal, A. Berg, J.I. Polinski, J.P. Hegarty, Z. Lin, K.J. McKenna, D.B. Stewart, L.S. Poritz, et al. (2012).
Mutations in IRGM are associated with more frequent need for surgery in patients with ileocolonic Crohn’s disease. Diseases of the Colon & Rectum, 55(2), 115–121. DOI
Clinical Research
A. Rotramel, L.S. Poritz, E. Messaris, A. Berg, D.B. Stewart (2012).
PPI therapy and albumin are better predictors of recurrent Clostridium difficile colitis than choice of antibiotics. Journal of Gastrointestinal Surgery, 16(12), 2267–2273. DOI
Clinical Research
W. Yu, J.P. Hegarty, A. Berg, A.A. Kelly, Y. Wang, L.S. Poritz, A. Franke, S. Schreiber, et al. (2012).
PTPN2 is associated with Crohn’s disease and its expression is regulated by NKX2-3. Disease Markers, 32(2), 83–91. DOI
Clinical ResearchStatistical Genetics
D.M. Avella, G. Li, T.D. Schell, D. Liu, S.S. Zhang, X. Lou, A. Berg, E.T. Kimchi, et al. (2012).
Regression of established hepatocellular carcinoma is induced by chemoimmunotherapy in an orthotopic murine model. Hepatology, 55(1), 141–152. DOI
Adult Oncology
T.M. Connelly, J.P. Hegarty, A. Berg, Z. Lin, S. Deiling, Y. Wang, W.A. Koltun (2012).
Single nucleotide polymorphisms (SNPs) of TNFSF15 are associated with surgical diverticulitis. Journal of the American College of Surgeons, 215(3), S32.
Clinical Research
K.C. Ang, M.S. Ngu, K.P. Reid, M.S. Teh, Z.S. Aida, D.X. Koh, A. Berg, S. Oppenheimer, et al. (2012).
Skin color variation in Orang Asli tribes of Peninsular Malaysia. PLoS ONE, 7(8). DOI
Clinical Research
D. Liao, A. Berg, W. Freeman, M. Shaffer, A. Vgontzas, S. Calhoun, E. Bixler (2012).
Sleep variability and cardiac arrhythmia in adolescents-Penn State Child Cohort Study: O246. Journal of Sleep Research, 21(1).
Clinical Research
E.Y. Popova, X. Xu, A.T. DeWan, A.C. Salzberg, A. Berg, J. Hoh, S.S. Zhang, C.J. Barnstable (2012).
Stage and gene specific signatures defined by histones H3K4me2 and H3K27me3 accompany mammalian retina maturation in vivo. PLoS ONE, 7(10). DOI
Statistical Genetics
E. Messaris, A. Berg, D.B. Stewart (2012).
Su1507 Single-Site Laparoscopic Colorectal Surgery Provides Similar Costs to Patients and Hospitals Compared to Standard Laparoscopic Surgery. Gastroenterology, 142(5), S–1051.
Adult OncologyClinical Research
A. Berg, T. McMurry, D.N. Politis (2012).
Testing time series linearity: Traditional and bootstrap methods. Handbook of Statistics, 30, 27-42. PDF DOI
MethodologyNonparametric
J. Kreiss, S.N. Lahiri, A. Berg, T. McMurry, D.N. Politis, S. Giannerini, D. Tj, J. Franke, et al. (2012).
Time Series Analysis: Methods and Applications. North-Holland.
MethodologyNonparametric

Conference Proceedings

T. Connelly, R. Sehgal, C. Choi, D. Brinton, A. Berg, S. Deiling, L. Poritz, W. Koltun (2012).
ATG16L1 Polymorphism is Associated with Increased Risk of Emergency Colectomy in Ulcerative Colitis. IRISH JOURNAL OF MEDICAL SCIENCE, 181, S174–S175.
Clinical Research
Y. Sun, J.B. Guttenplan, T. Cooper, C. Aliaga, J. Krzeminski, K. Chen, A. Berg, S. Amin, et al. (2012).
Comparable mutagenicity and carcinogenicity of (-)-[R, R]-and (+)-[S, S]-trans-1, 2-dihydro-1, 2-dihydroxy6-nitrochrysene in the rat mammary gland. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 244.
Clinical Research
R. Sehgal, A. Berg, J. Polinski, J. Hegarty, Z. Lin, K. McKenna, D. Stewart, L. Poritz, et al. (2012).
Mutations in IRGM are Associated with More Frequent Need for Surgery in Patients with Ileocolonic Crohn’s Disease (CD). IRISH JOURNAL OF MEDICAL SCIENCE, 181, S184–S184.
Clinical Research

Other

R.T. Wilson, J.D. Bortner, A. Berg, A. Roff, A. Das, J. Richie, J. Barnholtz-Sloan, K. El-Bayoumy (2012).
Cigarette smoking, race, and genetic ancestry in association with plasma vitamin D-binding protein (VDBP) in healthy African Americans (AA) and Caucasian Americans (CA). American Association for Cancer Research.
Clinical Research

2011

Journal Articles

M.V. Raval, P.W. Dillon, J.L. Bruny, C.Y. Ko, B.L. Hall, R.L. Moss, K.T. Oldham, K.E. Richards, et al. (2011).
1 American College of Surgeons National Surgical Quality Improvement Program Pediatric: A Phase 1 Report.
Pediatric Oncology
G. Fu, J. Luo, A. Berg, Z. Wang, J. Li, K. Das, R. Li, R. Wu (2011).
A dynamic model for functional mapping of biological rhythms. Journal of Biological Dynamics, 5(1), 84–101. DOI
Statistical Genetics
R. Sehgal, J. Polinski, A. Berg, J. Hegarty, A. Kelly, S. Deiling, W. Yu, Z. Lin, et al. (2011).
Association of the IL12-IL23-JAK2 inflammatory cascade with anal disease in patients with ileocolonic Crohn’s disease. P-019.. Inflammatory Bowel Diseases, 17(suppl_1), S17–S17.
Clinical Research
N.R. Jones, T.E. Spratt, A. Berg, J.E. Muscat, P. Lazarus, C.J. Gallagher (2011).
Association studies of excision repair cross-complementation group 1 (ERCC1) haplotypes with lung and head and neck cancer risk in a Caucasian population. Cancer Epidemiology, 35(2), 175–181. DOI
Clinical Research
R. Sehgal, A. Berg, J. Polinski, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
Correlation Of Gene Haplotypes With Complications After Ileal Pouch Anal Anastomosis. Journal of Surgical Research, 165(2), 211–212.
Clinical ResearchStatistical Genetics
Z. Lin, J.P. Hegarty, A. Berg, Z. Wang, Y. Wang, R. Wu, A. Kelly, L. Poritz, et al. (2011).
DLG5 P1371Q is associated with inflammatory bowel disease and complementary to R30Q in disease susceptibility. Swiss Medical Weekly, 141(w13290), 1-7. DOI
Clinical Research
J. Foulds, S. Veldheer, A. Berg (2011).
Electronic cigarettes (e-cigs): views of aficionados and clinical/public health perspectives. International Journal of Clinical Practice, 65(10), 1037–1042. DOI
Clinical Research
A. Berg, N. Li, C. Tong, Z. Wang, S. Berceli, R. Wu (2011).
Functional mapping of expression quantitative trait loci that regulate oscillatory gene expression. Methods Mol Biol, 734, 241-255. PDF DOI
Statistical Genetics
Z. Lin, G. John, J.P. Hegarty, A. Berg, W. Yu, Y. Wang, A.A. Kelly, B.Z. Peterson, et al. (2011).
Genetic Variants and Monoallelic Expression of Surfactant Protein-D in Inflammatory Bowel Disease. Annals of Human Genetics, 75(5), 559–568. DOI
Clinical ResearchStatistical Genetics
R. Sehgal, A. Berg, R. Figueroa, others (2011).
JACS Category 1 CME Credit Featured Articles, Volume 212, January 2011. J Am Coll Surg, 212, 119–123.
Clinical Research
W. Yu, J.P. Hegarty, A. Berg, X. Chen, G. West, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2011).
NKX2-3 transcriptional regulation of endothelin-1 and VEGF signaling in human intestinal microvascular endothelial cells. PLoS ONE, 6(5), e20454: 1–10. DOI
Clinical Research
G. John, J.P. Hegarty, W. Yu, A. Berg, D.M. Pastor, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2011).
NKX2-3 variant rs11190140 is associated with IBD and alters binding of NFAT. Molecular Genetics and Metabolism, 104(1-2), 174–179. DOI
Clinical ResearchStatistical Genetics
G. Ramesh, A. Berg, C. Jayakumar (2011).
Plasma netrin-1 is a diagnostic biomarker of human cancers. Biomarkers, 16(2), 172–180. DOI
Clinical Research
J. Cupp, Z. Simmons, A. Berg, S.H. Felgoise, S.M. Walsh, H.E. Stephens (2011).
Psychological health in patients with ALS is maintained as physical function declines. Amyotrophic Lateral Sclerosis, 12(4), 290–296. DOI
Clinical Research
R. Sehgal, A. Berg, R. Figueroa, L.S. Poritz, K.J. McKenna, D.B. Stewart, W.A. Koltun (2011).
Risk factors for surgical site infections after colorectal resection in diabetic patients. Journal of the American College of Surgeons, 212(1), 29–34. DOI
Adult OncologyClinical Research
A.K. Sharma, C.L. Kline, A. Berg, S. Amin, R.B. Irby (2011).
The Akt inhibitor ISC-4 activates prostate apoptosis response protein-4 and reduces colon tumor growth in a nude mouse model. Clinical Cancer Research, 17(13), 4474–4483. DOI
Adult OncologyClinical Research
L.S. Poritz, R. Sehgal, K. Hartnett, A. Berg, W.A. Koltun (2011).
Tumor volume and percent positive lymph nodes as a predictor of 5-year survival in colorectal cancer. Surgery, 150(4), 649–655. DOI
Adult OncologyClinical Research

Conference Proceedings

R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
Gene Signature Modeling to Predict Risk of Crohn’s Disease (CD) like Complications or Severe Pouchitis (SP) after Ileal Pouch Anal Anastomosis (IPAA). DISEASES OF THE COLON & RECTUM, 54(5), E15–E16.
Clinical ResearchStatistical Genetics
R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2011).
MUTATIONS IN IRGM ARE ASSOCIATED WITH MORE FREQUENT NEED FOR SURGERY IN ILEOCOLONIC CROHN’S DISEASE (CD) PATIENTS.. DISEASES OF THE COLON & RECTUM, 54(5), E15–E15.
Clinical Research

2010

Journal Articles

A. Berg, E. Paparoditis, D.N. Politis (2010).
A bootstrap test for time series linearity. Journal of Statistical Planning and Inference, 140(12), 3841-3857. PDF DOI
MethodologyNonparametric
G. Fu, A. Berg, K. Das, L. Jiahan, L. Runze, R. Wu (2010).
A statistical model for mapping morphological shape. Theoretical Biology and Medical Modelling, 7(28), 1–14. DOI
Statistical Genetics
A. Berg, K. Suaray (2010).
Bootstrap bandwidth selection for a smooth survival function estimator from censored data. Journal of Statistical Research, 44(2), 207-217. PDF
MethodologyNonparametric
D.R. Drost, C.I. Benedict, A. Berg, E. Novaes, C.R. Novaes, Q. Yu, C. Dervinis, J.M. Maia, et al. (2010).
Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus. Proceedings of the National Academy of Sciences, 107(18), 8492–8497. DOI
Statistical Genetics
N. Li, T. McMurry, A. Berg, Z. Wang, S.A. Berceli, R. Wu (2010).
Functional clustering of periodic transcriptional profiles through ARMA(p, q). PLoS ONE, 5(4). DOI
Statistical Genetics
J. Luo, A. Berg, K. Ahn, K. Das, J. Li, Z. Wang, Y. Li, R. Wu (2010).
Functional genomewide association studies of longitudinal traits. Handbook of Adaptive Designs in Pharmaceutical and Clinical Development, 402–415. DOI
Statistical Genetics
K. Ahn, J. Luo, A. Berg, D. Keefe, R. Wu (2010).
Functional mapping of drug response with pharmacodynamic–pharmacokinetic principles. Trends in Pharmacological Sciences, 31(7), 306–311. DOI
Statistical Genetics
G. Chen, N.E. Giambrone, D.F. Dluzen, J.E. Muscat, A. Berg, C.J. Gallagher, P. Lazarus (2010).
Glucuronidation genotypes and nicotine metabolic phenotypes: importance of functional UGT2B10 and UGT2B17 polymorphisms. Cancer Research, 70(19), 7543–7552. DOI
Clinical Research
Q. He, A. Berg, Y. Li, C.E. Vallejos, R. Wu (2010).
Mapping genes for plant structure, development and evolution: functional mapping meets ontology. Trends in Genetics, 26(1), 39–46. DOI
Statistical Genetics
Y. Li, A. Berg, L.R. Wu, Z. Wang, G. Chen, R. Wu (2010).
Modeling the aneuploidy control of cancer. BMC Cancer, 10(346), 1–9. DOI
Clinical Research
M. Lin, A. Berg, R. Wu (2010).
Modeling the Genetic Etiology of Pharmacokinetic–Pharmacodynamic Links with the ARMA Process. Journal of Biopharmaceutical Statistics, 20(2), 351–372. DOI
Statistical Genetics
R. Sehgal, A. Berg, J.P. Hegarty, A.A. Kelly, Z. Lin, L.S. Poritz, W.A. Koltun (2010).
NOD2/CARD15 mutations correlate with severe pouchitis after ileal pouch-anal anastomosis. Diseases of the Colon & Rectum, 53(11), 1487–1494. DOI
Clinical Research
A. Berg, T.L. McMurry, D.N. Politis (2010).
Subsampling p-values. Statistics and Probability Letters, 80, 1358-1364. PDF DOI
Clinical Research
A. Berg, Q. He, Y. Shen, Y. Chen, M. Huang, R. Wu (2010).
Trilocus disequilibrium analysis of multiallelic markers in outcrossing populations. Statistical Applications in Genetics and Molecular Biology, 9(1), 1-22. PDF DOI
Methodology
Z. Lin, G. John, J.P. Hegarty, A. Berg, T. Li, D.M. Pastor, A.A. Kelly, Y. Wang, et al. (2010).
W1236 NOD2 Mutations Compromise Host Defense Mechanisms to Enteric Bacteria as Shown by Decreased NF-kB in Human B Cells After Muramyl Dipeptide (MDP) Stimulation. Gastroenterology, 138(5), S–680.
Clinical Research
G. John, Z. Lin, J.P. Hegarty, A. Berg, D.M. Pastor, A.A. Kelly, Y. Wang, L.S. Poritz, et al. (2010).
W1247 Nkx2-3 Variant Rs11190140 is Associated With IBD and Alters NFAT Transcription Factor Binding. Gastroenterology, 138(5), S–683.
Clinical ResearchStatistical Genetics
B. Kim, T. McMurry, W. Zhao, R. Wu, A. Berg (2010).
Wavelet-based functional clustering for patterns of high-dimensional dynamic gene expression. Journal of Computational Biology, 17(8), 1067-1080. PDF DOI
MethodologyStatistical Genetics

Conference Proceedings

R. Sehgal, A. Berg, J. Hegarty, A. Kelly, Z. Lin, L. Poritz, W. Koltun (2010).
NOD2 MUTATIONS CORRELATE WITH SEVERE POUCHITIS AFTER ILEAL POUCH-ANAL ANASTOMOSIS. DISEASES OF THE COLON & RECTUM, 53(4), 542–542.
Clinical Research

2009

Journal Articles

Y. Li, A. Berg, M.N. Chang, P. Du, K. Ahn, D. Mauger, D. Liao, R. Wu (2009).
A statistical model for genetic mapping of viral infection by integrating epidemiological behavior. Statistical Applications in Genetics and Molecular Biology, 8(1), 38: 1–22. DOI
MethodologyStatistical Genetics
I. Abramson, A. Berg (2009).
An occupancy problem arising in power law fitting. Internet Mathematics, 6(1), 19-28. PDF DOI
Clinical Research
A. Berg, D. Politis (2009).
CDF and survival function estimation with infinite-order kernels. Electronic Journal of Statistics, 3, 1436-1454. PDF DOI
Clinical Research
Y. Cheng, A. Berg, S. Wu, Y. Li, R. Wu (2009).
Computing genetic imprinting expressed by haplotypes. Methods Mol Biol, 189–212. DOI
Statistical Genetics
Q. He, Y. Shen, Y. Chen, Y. Zhou, A. Berg, R. Wu, M. Huang (2009).
Development of 16 polymorphic simple sequence repeat markers for Lycoris longituba from expressed sequence tags. Molecular Ecology Resources, 9(1), 278–280. DOI
Clinical Research
R. Wu, A. Berg, Q. Li (2009).
Discussion: Why do we test multiple traits in genetic association studies?. Journal of the Korean Statistical Society, 1(38), 11–13. DOI
Statistical Genetics
A. Berg, D. Politis (2009).
Higher-order accurate polyspectral estimation with flat-top lag-windows. Annals of the Institute of Statistical Mathematics, 61(2), 477-498. PDF DOI
MethodologyNonparametric
A. Berg (2009).
International Workshop on Statistical & Computational Genetics: Computational Workbook using R.
Clinical Research
S. Wen, C. Wang, A. Berg, Y. Li, M.M. Chang, R.B. Fillingim, M.R. Wallace, R. Staud, et al. (2009).
Modeling genetic imprinting effects of DNA sequences with multilocus polymorphism data. Algorithms for Molecular Biology, 4(11), 1–11. DOI
Statistical Genetics
W. Hou, T. Liu, Y. Li, Q. Li, J. Li, K. Das, A. Berg, R. Wu (2009).
Multilocus genomics of outcrossing plant populations. Theoretical Population Biology, 76(1), 68–76. DOI
Statistical Genetics
S. Wu, J.S. Yap, Y. Li, Q. Li, G. Fu, J. Li, K. Das, A. Berg, et al. (2009).
Network models for dissecting plant development by functional mapping. Current Bioinformatics, 4(3), 183–187. DOI
Statistical Genetics

2008

Journal Articles

B. Kim, L. Zhang, A. Berg, J. Fan, R. Wu (2008).
A computational approach to the functional clustering of periodic gene-expression profiles. Genetics, 180(2), 821–834. DOI
MethodologyStatistical Genetics
C. Ma, Q. Yu, A. Berg, D. Drost, E. Novaes, G. Fu, J.S. Yap, A. Tan, et al. (2008).
A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait. Genetics, 179(1), 627–636. DOI
MethodologyStatistical Genetics
A. Berg (2008).
Multivariate lag-windows and group representations. Journal of Multivariate Analysis, 99(10), 2479-2496. PDF DOI
MethodologyNonparametric
B. Brumback, A. Berg (2008).
On effect-measure modification: Relationships among changes in the relative risk, odds ratio, and risk difference. Statistics in Medicine, 27(18), 3453–3465. PDF DOI
Methodology

2007

Journal Articles

D.L. Kane, D. Kilb, A. Berg, V.G. Martynov (2007).
Quantifying the remote triggering capabilities of large earthquakes using data from the ANZA Seismic Network catalog (southern California). Journal of Geophysical Research: Solid Earth, B11302(1–14). DOI
Clinical Research

2006

Journal Articles

A. Berg, D. Politis (2006).
Higher-Order estimation of s-th order spectra with flat-top lag-windows. arXiv preprint math/0612681.
MethodologyNonparametric

2005

Conference Proceedings

D. Kane, D. Kilb, A. Berg, V. Martynov (2005).
Quantifying Properties Of Triggering (Non-Triggering) Local Mainshock/Aftershock Sequences: Establishing Thresholds That Can Be Applied To Remote Mainshock/Aftershock Triggering Studies. AGU Fall Meeting Abstracts.
BayesianMethodology

Grants

Extramural research support — active, pending, and completed awards.

Active

Active 01/2025–12/2027 · PI: Giselle Saulnier Sholler · Cannonball Kids’ Cancer Foundation
Cannonball Kid’s Sponsor Cost BCC022: Phase II Trial of Naxitamab and Tipifarnib for Relapsed/Refractory Neuroblastoma. Budget: $200,000 · # 293814
Adult OncologyClinical TrialsPediatric Oncology
Active 04/2025–12/2027 · PI: Giselle Saulnier Sholler · Trial Blazers for Kids Foundation
Trailblazers portion of Cannonball Kid’s Sponsor Cost BCC022: Phase II Trial of Naxitamab and Tipifarnib for Relapsed/Refractory Neuroblastoma. Budget: $133,300 · # 298322
Clinical TrialsPediatric Oncology
Active 07/2024–06/2027 · PI: Arun Sharma · U.S. Army Medical Research and Development Command
A unique small molecule for triple-negative breast cancer. Budget: $1,255,505 · # HT94252410698
Adult Oncology
Active 07/2023–06/2026 · PI: Arati Sharma · Four Diamonds Fund Research Program
Combination Therapy for Childhood Acute Myeloid Leukemia. Budget: $250,000 · # 4D21_2024_1002-EXT
Pediatric Oncology
Active 09/2023–09/2026 · PI: Gavin Robertson · U.S. Army Medical Research and Development Command
Identifying novel approaches for melanoma prevention using mouse models with humanized telomeres. Budget: $829,986 · # HT94252310964
Adult Oncology
Active 08/2021–04/2027 · PI: Prasanna Karunanayaka · National Institute on Aging
Linking olfactory deficits to memory impairment and AD neurodegeneration. Budget: $3,855,438 · # 5 R01 AG070088-05-EXT
Neuroscience

Pending

Pending 07/2026–06/2031 · PI: Dahlia Mukherjee · National Institutes of Health
A Phased Investigation of the GLP-1RA Liraglutide for the Treatment of Anhedonia in Major Depressive Disorder. Budget: $6,715,017 · # 255852
Clinical Research
Pending 07/2026–06/2031 · PI: Arthur Berg · Albert Einstein College of Medicine
Arginine Metabolism as a Therapeutic Vulnerability in Ewing Sarcoma. Budget: $123,822 · # 256135
Pediatric Oncology
Pending 07/2026–06/2031 · PI: Prashant Nighot · National Institutes of Health
Autophagy in Intestinal Health and Disease. Budget: $3,884,722 · # 256266
Clinical Research
Pending 12/2026–11/2031 · PI: Arthur Berg · University of Miami
Behavioral and Lifestyle Approaches to Nutrition and Cardiometabolic Health after SCI (BALANCE-SCI. Budget: $247,984 · # 258410
Clinical ResearchSpinal Cord Injury
Pending 07/2026–06/2031 · PI: Gavin Robertson · National Institutes of Health
Disrupting Redox Cooperation and Unlocking Immune Vulnerabilities in Metastatic Melanoma. Budget: $3,914,975 · # 256557
Adult Oncology
Pending 01/2026–12/2026 · PI: Gavin Robertson · Elsa U. Pardee Foundation [MP]
Exploiting Tumor Cell Stress in an Immunogenic Drug-Tolerant Persister Cell Subpopulation to Trigger Natural Killer Cell-Mediated Immunity. Budget: $205,589 · # 255552
Adult Oncology
Pending 07/2026–06/2031 · PI: Gavin Robertson · National Institutes of Health
Mechanical Stress in Acral Melanoma Progression.. Budget: $3,946,982 · # 257119
Adult Oncology
Pending 12/2026–11/2031 · PI: Gavin Robertson · National Institutes of Health
Mechanically Induced Cellular Plasticity Enabling Dynein-Driven Migration. Budget: $7,312,233 · # 258946
Clinical Research
Pending 06/2026–05/2028 · PI: Gavin Robertson · Melanoma Research Foundation [MP]
Modeling Pediatric Melanomagenesis and Dormancy with Humanized Telomeres. Budget: $250,000 · # 257043
Adult OncologyPediatric Oncology
Pending 04/2026–03/2031 · PI: Arthur Berg · Brandeis University
Multitargeting Nanotherapeutics for Treating Drug-Resistant Metastatic Osteosarcoma (mOS). Budget: $123,630 · # 254947
Pediatric Oncology
Pending 04/2026–03/2031 · PI: Arati Sharma · National Institutes of Health
Nano-scale ionic liquids of an investigational ROCK inhibitor to augment acute myeloid leukemia therapy. Budget: $3,946,935 · # 253735
Pediatric Oncology
Pending 07/2026–06/2031 · PI: Arun Sharma · National Institutes of Health
Novel IGF2BP1 inhibitors for melanoma treatment. Budget: $3,914,950 · # 256423
Adult Oncology
Pending 12/2026–11/2031 · PI: Wei Li · National Institutes of Health
Penn State-Translational Pediatric Oncology Training Program (PS-TPOTP). Budget: $1,045,142 · # 258330
Adult OncologyClinical ResearchPediatric OncologyStatistics Education
Pending 10/2026–09/2029 · PI: Gavin Robertson · U.S. Army Medical Research and Development Command
Targeting Persister Cells in Melanoma Metastasis. Budget: $1,263,649 · # 256122
Adult Oncology
Pending 10/2026–09/2028 · PI: Gavin Robertson · American Cancer Society [MP]
Translating AKT/WEE1 Inhibition into an NK-Cell-Activating Strategy. Budget: $297,000 · # 257595
Adult Oncology
Pending 10/2026–09/2028 · PI: Ariane Levesque · American Cancer Society [MP]
Understanding Parental Decision-Making Surrounding Enrollment in Early Phase and Precision Medicine Clinical Trials in Pediatric Oncology. Budget: $297,000 · # 257530
Adult OncologyClinical TrialsPediatric Oncology
Pending 08/2026–07/2027 · PI: Ariane Levesque · The Andrew McDonough B+ Foundation
When Expectations Diverge: A Dyadic Examination of Parent-Provider Discordance in Patient Care Expectations, Communication, and Psychosocial Outcomes in Pediatric Oncology. Budget: $25,000 · # 259223
Adult OncologyPediatric Oncology
Pending 10/2025–10/2027 · PI: Gavin Robertson · Melanoma Research Foundation [MP]
3A1 Cells as Biomarkers of Lethal Melanoma. Budget: $250,000 · # 252475
Adult Oncology
Pending 09/2025–08/2030 · PI: Arthur Berg · Albert Einstein College of Medicine
Arginine Metabolism as a Therapeutic Vulnerability in Ewing Sarcoma. Budget: $91,269 · # 253508
Pediatric Oncology
Pending 12/2025–11/2030 · PI: William Kenney · National Institutes of Health
Identification of Critical Thermal Environments for Aged Adults. Budget: $3,811,428 · # 251686
Clinical Research
Pending 12/2025–11/2027 · PI: Gavin Robertson · National Institutes of Health
Targeting FBXL12 to Eliminate ALDH3A1-Mediated Drug-Tolerant Persister Cells. Budget: $458,704 · # 251464
Adult Oncology
Pending 09/2025–08/2028 · PI: Arthur Berg · University of Miami
The biobehavioral response to food intake and its association with obesity in chronic spinal cord injury. Budget: $77,249 · # 249901
Clinical ResearchSpinal Cord Injury

Completed

Completed 6/8/2023-7/31/2023 · PI: William Kenney · National Institute on Aging
Characterization of passive and active whole-body heat stress responses in obese and non-obese adults. Role: Other · Budget: $215,064 · # 1 F32 AG079581-01A1
Clinical Research
Completed 5/1/2022-4/30/2025 · PI: Seyed Mansouri · National Cancer Institute
Neuro-pharmacological Properties of Repurposed Posaconazole in Glioblastoma: A Phase 0 Clinical Trial. Role: Other · Budget: $140,846 · # 1 R03 CA255992-01A1
Adult OncologyClinical Trials
Completed 10/1/2022-3/31/2023 · PI: James McInerney · Icahn School of Medicine at Mount Sinai
RAD-PD: Registry for the Advancement of DBS in Parkinson’s Disease. Role: Faculty · Budget: $29,281 · # 0266-3886-4609
Neuroscience
Completed 10/29/2020-10/31/2025 · PI: Nelson Yee · Lilly USA LLC
A Phase II Study to Evaluate the Response and Tolerability of Abemaciclib in Patients with Advanced Biliary Tract Carcinoma Who Have Failed Prior Chemotherapy.. Role: Co-Investigator · Budget: $383,500 · # I3Y-MC-E004
Adult OncologyClinical Trials
Completed 7/1/2020-6/30/2022 · PI: Shou Ling Leong · Health Resources and Services Administration
Primary Care Training and Enhancement. Role: Co-Investigator · Budget: $2,568,830 · # 5 T0BHP30010-05-00-EXT
Clinical Research
Completed 4/15/2020-3/31/2026 · PI: Gavin Robertson · National Cancer Institute
Targeting Aldehyde Dehydrogenase for Cancer Prevention. Role: Other · Budget: $3,170,470 · # 1 R01 CA241148-01A1
Adult Oncology
Completed 7/1/2019-6/30/2022 · PI: Arun Sharma · U.S. Army Medical Research and Development Command
A novel agent for lung cancer prevention. Role: Other · Budget: $582,205 · # W81XWH1910231-EXT
Adult Oncology
Completed 7/1/2019-12/31/2020 · PI: Arun Sharma · Penn State Research Foundation
Establishing drug-like properties of AS-10, a potential pancreatic cancer therapy. Role: Other · Budget: $12,500 · # 224862
Adult Oncology
Completed 10/1/2019-1/10/2021 · PI: Saketh Dinavahi · Melanoma Research Foundation
Modulating p53 transcriptional activity to reduce melanoma brain metastasis. Role: Other · Budget: $100,000 · # 226521
Adult OncologyNeuroscience
Completed 7/1/2019-6/30/2020 · PI: Shou Ling Leong · Health Resources and Services Administration
Primary Care Training and Enhancement Program. Role: Co-Investigator · Budget: $975,578 · # 5 TOBHP30010-04-00
Clinical Research
Completed 12/6/2018-11/30/2021 · PI: Arun Sharma · National Cancer Institute
A promising small molecule for pancreatic cancer therapy. Role: Other · Budget: $362,705 · # 1 R21 CA234681-01
Adult Oncology
Completed 7/3/2018-12/31/2018 · PI: Jin-Ming Yang · National Cancer Institute
Nucleus Accumbens-Associated Protein-1 in Melanoma Immunotherapy. Role: Other · Budget: $2,835,828 · # 1 R01 CA221867-01A1
Adult Oncology
Completed 7/1/2018-6/30/2019 · PI: Shou Ling Leong · Health Resources and Services Administration
Primary Care Training and Enhancement Program. Role: Co-Investigator · Budget: $477,871 · # 5 TO BHP30010-03-00
Clinical Research
Completed 7/1/2017-6/30/2019 · PI: Alan Adelman · COP: Department of Health
Area Health Education Centers (State Baseline). Role: Co-Investigator · Budget: $1,230,000 · # 4100080688
Clinical Research
Completed 9/1/2017-5/31/2019 · PI: David Gater · Eunice Kennedy Shriver National Institute of Child Health and Human Development
Spinal Cord Injury Exercise and Nutrition Conceptual Engagement (SCIENCE). Role: Co-Investigator · Budget: $1,982,948 · # 1 R01 HD091278-01-REVISED
Clinical ResearchSpinal Cord Injury
Completed 6/1/2016-5/31/2018 · PI: Jianxun Song · National Institute of Allergy and Infectious Diseases
Stem cell-derived regulatory T cells for therapeutic use in arthritis. Role: Co-Investigator · Budget: $1,915,070 · # 1 R01 AI121180-01A1
Clinical Research
Completed 1/1/2016-12/31/2016 · PI: Jianxun Song · American Diabetes Association
Stem cell-­-derived regulatory T cells for therapeutic use of autoimmune diabetes. Role: Other · Budget: $115,000 · # 1-16-IBS-281
Clinical Research
Completed 7/1/2015-3/31/2017 · PI: Arun Sharma · National Cancer Institute
A novel compound for colorectal cancer prevention. Role: Other · Budget: $74,443 · # 5 R03CA181845-02
Adult Oncology
Completed 10/1/2015-6/30/2017 · PI: Steven Hicks · Motion Intelligence LLC
Improving Autism Screening with Brain-Related miRNA-Specific Aim 1. Role: Other · Budget: $18,000 · # 181047 EXT
Neuroscience
Completed 6/1/2015-5/31/2016 · PI: Song Zheng · National Institute of Arthritis and Musculoskeletal and Skin Diseases
Therapeutic Immunoregulation Mediated by TGF-beta-induced iTregs in Autoimmune Arthritis. Role: Co-Investigator · Budget: $372,261 · # 2 R01 AR059103-07
Clinical Research
Completed 6/15/2014-3/31/2018 · PI: Kent Vrana · National Institute on Alcohol Abuse and Alcoholism
A diagnostic plasma protein panel for alcohol abuse. Role: Other · Budget: $344,250 · # 1 R01 AA021661-01A1
Clinical Research
Completed 7/11/2014-6/30/2015 · PI: Arun Sharma · National Cancer Institute
A novel compound for colorectal cancer prevention. Role: Other · Budget: $74,521 · # 1 R03 CA181845-01A1
Adult Oncology
Completed 4/7/2014-9/30/2016 · PI: Dhimant Desai · National Cancer Institute
Chemoprevention of colon cancer by a novel COX-2 inhibitor. Role: Other · Budget: $76,500 · # 1 R03 CA180539-01A1
Adult Oncology
Completed 9/20/2014-7/31/2015 · PI: Craig Meyers · National Institute of Dental and Craniofacial Research
Effect of HPV16 and ART on the Epigenome Leading to AIDS-Associated Oral Cancer. Role: Co-Investigator · Budget: $496,064 · # 1 R01 DE024964-01
Adult OncologyStatistical Genetics
Completed 6/6/2013-11/30/2013 · PI: Gavin Robertson · Melanovus Oncology, Inc.
Establishing Bioactive Serum and Toxicity Levels for Nanolipolee 007. Role: Co-Investigator · Budget: $43,312 · # 1A-20125-REVISED
Adult Oncology
Completed 9/1/2013-8/31/2018 · PI: Scot Kimball · National Institute of Diabetes and Digestive and Kidney Diseases
Macronutrient Regulation of Alternative Pre-mRNA Splicing. Role: Faculty · Budget: $330,546 · # 1 R01 DK094141-01A1
Statistical Genetics
Completed 12/1/2013-8/31/2016 · PI: Jonathan Foulds · Pfizer Incorporated
Pilot Randomized Trial of an Automated Smoking Cessation Intervention Via Mobile Phone Text Messages as an Adjunct to Varenicline in Primary Care: GRAND 2012. Role: Co-Investigator · Budget: $200,000 · # CP63290
Adult OncologyClinical ResearchStatistics Education
Completed 1/1/2012-6/30/2013 · PI: Arthur Berg · PA Tobacco Settlement Fund (TSF)
Development of Bioinformatics Methods for Medical Research. Role: Principal Investigator · Budget: $4,551,311 · # 4100057673
Clinical Research
Completed 7/9/2012-6/30/2014 · PI: Arun Sharma · National Cancer Institute
Development of a Novel Agent for Lung Cancer Prevention. Role: Co-Investigator · Budget: $71,053 · # 1 R03 CA171646-01
Adult Oncology
Completed 1/1/2012-6/30/2014 · PI: John Reid · Orthopaedic Trauma Association
Expression of Single Nucleotide Polymorphisms in Delayed Fracture Healing. Role: Co-PI · Budget: $25,000 · # 140560
Clinical Research
Completed 3/1/2012-11/30/2016 · PI: Lawrence Sinoway · National Center for Research Resources
Penn State Clinical and Translational Science Institute. Role: Other · Budget: $4,465,551 · # 8 UL1 TR000127-02
Spinal Cord Injury
Completed 10/1/2012-9/30/2016 · PI: Jeffrey Pu · Aplastic Anemia and MDS International Foundation
Relevance of PIG-A mutations in acquired bone marrow failure diseases. Role: Research Associate · Budget: $60,000 · # 146818
Clinical Research
Completed 7/20/2012-12/31/2013 · PI: Walter Koltun · PA Tobacco Settlement Fund (TSF)
UGT Genetic Variation and Colorectal Cancer Risk. Role: Co-Investigator · Budget: $8,220,859 · # 4100050904
Adult Oncology
Completed 3/1/2011-2/28/2014 · PI: Henry Donahue · National Institute of Arthritis and Musculoskeletal and Skin Diseases
Biophysical Signals, Biomaterial Surface Characteristics and hMSC Differentiation. Role: Co-Investigator · Budget: $314,825 · # 5 R01 AR054937-03
Clinical Research
Completed 6/1/2011-2/29/2012 · PI: Lawrence Sinoway · National Center for Research Resources
Penn State Clinical and Translational Science Institute. Role: Co-PI · Budget: $4,467,207 · # 1 UL1 RR033184-01
Spinal Cord Injury
Completed 6/1/2011-12/31/2012 · PI: Robert Aronoff · HMC Clinical Research Incentive Grant
Using High Dimensional Models to Predict 30-day Readmission after Heart Failure. Role: Co-PI · Budget: $49,900 · # 133476
Clinical Research
Completed 9/1/2010-8/31/2011 · PI: Rishabh Sehgal · American Society of Colon and Rectal Surgeons
Correlation of Gene Haplotype with Complications after IPAA. Role: Co-PI · Budget: $50,000 · # I-104
Clinical Research

Protocols

IRB/IACUC/IBC research protocols on which I serve as Principal Investigator, Co-Investigator, or Research Support.

Active

Active Approved 2025-04-15 · Orthopaedics and Therapy Services (HERSHEY)
Comparing runners’ perception of their biomechanics through validation of RunScribe wearable technology in an outdoor environment. Role: Other, Research Support · # STUDY00025813 · Human
Clinical Research
Active Approved 2022-04-11 · Expires 2026-12-03 · American Brain Tumor Association; Illumina, Incorporated; Neurosurgery (HERSHEY)
Prospective proteogenomic analysis of CNS tumors. Role: Co-Investigator · # STUDY00018825 · Human
Adult OncologyNeuroscience
Active Approved 2021-11-23 · Expires 2026-09-09 · National Institutes of Health (NIH)
Linking olfactory deficits to memory impairment and AD neurodegeneration. Role: Co-Investigator · # STUDY00018557 · Human
Neuroscience
Active Approved 2021-08-17
A Retrospective Review of Colon, Rectal, and Anal Cancers. Role: Research Support · # STUDY00018386 · Human
Adult Oncology
Active Approved 2021-05-12
Value of Telephone, Televideo, and In-Person Visit Equivalent as Measured by Number of Diagnoses per Encounter. Role: Co-Investigator · # STUDY00017346 · Human
Clinical Research
Active Approved 2021-03-11 · Penn State Clinical and Translational Science Institute / NIH (HERSHEY)
Bridging the Divide between Penn State Health and Community Health Centers: Translating a Colorectal Screening Program to Address the Needs of At-risk Populations in Central PA. Role: Co-Investigator · # STUDY00013449 · Human
Adult Oncology
Active Approved 2020-02-04 · Carnegie Mellon University; National Institutes of Health (NIH)
PSCI-18-131 Micro/Nano Technology for Isolation of Extracellular Vesicles and Towards Non-Invasive Diagnosis of Pancreatic Cancer. Role: Co-Investigator · # STUDY00012229 · Human
Adult OncologyStatistical Genetics
Active Approved 2019-11-25 · Health Resources and Services Administration
Assessment of third-year medical student attainment of the Pennsylvania state core competencies for education on opioids and addiction. Role: Co-Investigator · # STUDY00013887 · Human
Clinical Research
Active Approved 2018-10-22 · Expires 2026-08-14 · Hirshberg Foundation for Pancreatic Cancer Research
PSCI 18-041 Extracellular Vesicles as Biomarkers for Early Detection of Recurrent Pancreatic Carcinoma. Role: Research Support · # STUDY00010679 · Human
Adult OncologyStatistical Genetics
Active Approved 2018-06-26 · Expires 2026-06-29 · College of Medicine; Penn State Health St. Joseph Medical Center; United Way of Berks County, Inc.
Fruit and Vegetable Prescription Program Proposal (Veggie Rx). Role: Research Support · # AFFILVEGGIERX · Human
Clinical Research
Active Approved 2018-05-21
Assessing burnout in mother physician residents in comparison to their physician residents cohort. Role: Co-Investigator · # STUDY00008364 · Human
Clinical Research
Active Approved 2018-04-04
Effects of the establishment of a procedure clinic within a family medicine residency practice site. Role: Research Support · # STUDY00009290 · Human
Clinical Research
Active Approved 2017-11-14
Burnout and Vitality Survey of Penn State College of Medicine Department of Family & Community Medicine Providers. Role: Co-Investigator · # STUDY00008462 · Human
Clinical Research
Active Approved 2017-10-26
Advancement of Women Faculty in Family & Community Medicine. Role: Other · # STUDY00007918 · Human
Clinical Research
Active Approved 2017-09-15
Raising a Child with Type 1 Diabetes and Autism; Qualitative Thematic Analysis (Blogs). Role: Other · # STUDY00007977 · Human
Adult OncologyClinical Research
Active Approved 2014-02-25
Biomarker Analysis of Barrett’s Esophagus. Role: Co-Investigator · # STUDY00000181 · Human
Adult OncologyStatistical Genetics

Pending

Pending Beat Childhood Cancer Foundation Inc
BCC023 A Phase II Open Label Basket Trial Study Using Eflornithine (DFMO) for Ewing Sarcoma and Osteosarcoma. Role: Research Support · # STUDY00027897 · Human
Adult OncologyPediatric Oncology